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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:264.5 nTPM
HPA:264.5 nTPM
GTEx:191.9 nTPM
FANTOM5:315.4 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:62.3 nTPM
Allen mouse:0.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 264.5
Sample id Sample description nTPM
Amygdala
nTPM: 262.7
2814 Male, age 76, right hemisphere 281.9
2517 Female, age 94, left hemisphere 264.0
2695 Female, age 67, right hemisphere 263.9
2514 Male, age 75, right hemisphere 254.6
1987 Female, age 91, left hemisphere 249.2
Basal amygdala
nTPM: 255.5
2685 Female, age 94, left hemisphere 265.0
2827 Female, age 67, right hemisphere 260.9
1955 Male, age 76, both hemispheres 254.3
2110 Male, age 80, left hemisphere 253.8
2609 Male, age 75, right hemisphere 253.2
2243 Female, age 91, right hemisphere 246.0
Central amygdala
nTPM: 263.2
1905 Male, age 76, both hemispheres 274.9
2826 Female, age 94, left hemisphere 273.9
2515 Male, age 75, right hemisphere 257.5
2239 Male, age 80, left hemisphere 255.8
2701 Female, age 91, right hemisphere 254.0
Corticomedial amygdala
nTPM: 246.5
2535 Female, age 67, right hemisphere 254.9
2829 Male, age 80, left hemisphere 254.0
2428 Male, age 75, right hemisphere 250.1
2240 Male, age 76, both hemispheres 246.2
2429 Female, age 94, left hemisphere 241.6
2242 Female, age 91, right hemisphere 232.3
Lateral amygdala
nTPM: 264.5
2534 Female, age 94, left hemisphere 272.1
1883 Male, age 76, both hemispheres 270.1
2830 Female, age 67, right hemisphere 269.2
2256 Male, age 80, left hemisphere 262.7
2516 Male, age 75, right hemisphere 259.0
2255 Female, age 91, right hemisphere 254.0
Stria terminalis, bed nucleus
nTPM: 253.9
1974 Female, age 91, both hemispheres 261.2
2201 Male, age 74, unknown 251.3
2486 Female, age 94, both hemispheres 249.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 191.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 191.9
Samples: 152

Max nTPM: 428.9
Min nTPM: 40.4
Std nTPM: 46.9
Median nTPM: 187.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 428.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 368.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 346.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 302.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 282.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 278.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 271.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 268.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 260.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 258.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 255.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 254.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 253.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 252.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 252.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 248.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 246.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 235.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 235.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 234.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 232.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 231.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 230.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 230.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 230.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 224.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 223.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 222.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 221.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 221.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 220.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 220.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 220.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 220.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 219.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 218.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 217.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 216.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 211.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 210.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 209.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 207.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 206.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 206.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 205.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 204.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 203.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 203.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 202.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 202.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 202.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 200.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 199.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 199.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 199.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 198.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 198.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 198.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 198.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 198.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 197.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 196.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 196.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 196.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 195.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 194.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 194.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 193.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 191.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 191.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 190.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 190.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 189.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 189.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 187.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 187.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 187.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 186.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 182.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 182.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 180.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 180.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 179.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 179.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 178.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 178.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 177.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 176.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 175.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 175.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 175.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 173.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 173.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 171.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 171.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 170.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 170.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 170.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 169.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 169.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 169.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 168.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 168.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 167.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 166.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 166.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 165.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 165.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 164.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 164.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 164.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 163.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 163.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 163.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 161.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 161.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 158.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 158.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 158.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 158.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 157.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 156.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 156.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 154.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 154.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 153.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 152.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 152.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 152.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 151.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 149.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 148.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 147.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 145.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 144.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 144.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 143.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 140.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 140.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 129.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 115.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 93.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 40.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 315.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 315.4
FF:10151-102I7 76 years, female 315.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.9
Pig sample Sample description nTPM
Amygdala
nTPM: 50.9
Samples: 4

Max nTPM: 61.3
Min nTPM: 37.8
Sample A Female 53.6
Sample B Female 61.3
Sample C Male 50.9
Sample D Male 37.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 62.4
Samples: 4

Max nTPM: 70.6
Min nTPM: 56.3
Sample A Male 63.7
Sample B Male 56.3
Sample C Female 70.6
Sample D Female 58.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.9
564753 Antisense, RP_040826_01_C09, Mouse strain C57BL/6J (56 days, male) 0.9

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