MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:281.8 nTPM
HPA:281.8 nTPM
GTEx:231.8 nTPM
FANTOM5:480.1 Scaled Tags Per Million
Pig:100.4 nTPM
Mouse:96.2 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 281.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 273.2
2586 Male, age 75, left hemisphere 296.4
2411 Female, age 72, unknown 287.1
1870 Female, age 42, unknown 284.1
1830 Male, age 51, unknown 279.7
1833 Male, age 53, unknown 274.1
2828 Female, age 72, unknown 272.1
1827 Male, age 72, unknown 269.4
2019 Male, age 18, unknown 268.0
2666 Male, age 74, left hemisphere 259.4
2219 Male, age 76, both hemispheres 241.5
Dorsal raphe nucleus
nTPM: 257.8
2750 Male, age 76, both hemispheres 277.4
1828 Male, age 53, unknown 256.9
2047 Male, age 72, unknown 254.5
2298 Female, age 72, unknown 250.9
2016 Female, age 72, unknown 249.6
Inferior colliculus
nTPM: 252.6
2849 Male, age 72, unknown 256.9
1848 Female, age 42, unknown 253.5
1890 Male, age 53, unknown 252.8
2097 Female, age 72, unknown 247.4
Median raphe nucleus
nTPM: 249.5
2220 Male, age 76, midline 249.5
Pedunculopontine tegmental nucleus
nTPM: 256.2
2334 Male, age 80, both hemispheres 260.2
1921 Female, age 85, both hemispheres 256.9
2338 Male, age 61, both hemispheres 251.5
Periaquaductal grey, anterior
nTPM: 263.3
1947 Male, age 18, unknown 265.8
2502 Female, age 75, unknown 264.4
1795 Male, age 51, unknown 259.6
Periaquaductal grey, dorsal
nTPM: 246.7
2464 Female, age 72, unknown 256.7
1831 Male, age 72, unknown 246.2
2850 Male, age 76, both hemispheres 244.7
1840 Male, age 53, unknown 239.3
Periaquaductal grey, lateral
nTPM: 249.8
2053 Male, age 18, unknown 255.7
2140 Male, age 76, both hemispheres 249.6
2272 Male, age 74, both hemispheres 244.1
Pretectal area
nTPM: 261.6
2407 Male, age 75, both hemispheres 274.6
2007 Male, age 72, unknown 268.4
1817 Female, age 42, unknown 265.6
2825 Male, age 18, unknown 265.1
1815 Male, age 53, unknown 264.8
2316 Male, age 76, right hemisphere 264.0
2667 Female, age 75, unknown 261.8
1944 Female, age 72, unknown 260.4
1816 Male, age 51, unknown 257.3
2224 Female, age 72, unknown 249.7
2273 Male, age 74, both hemispheres 246.2
Red nucleus
nTPM: 281.8
1865 Male, age 51, unknown 293.3
2584 Male, age 75, left hemisphere 291.7
1904 Male, age 53, unknown 289.2
2769 Male, age 72, unknown 283.3
2227 Male, age 72, unknown 282.7
2823 Male, age 76, right hemisphere 282.6
2785 Male, age 18, unknown 280.1
2503 Female, age 72, unknown 278.8
1821 Female, age 72, unknown 277.8
2588 Male, age 74, left hemisphere 277.4
1954 Female, age 42, unknown 275.1
2725 Female, age 75, unknown 269.7
Substantia nigra
nTPM: 256.1
2583 Male, age 75, right hemisphere 282.4
1889 Female, age 72, unknown 267.2
1851 Male, age 51, unknown 259.5
2590 Female, age 75, unknown 259.2
2699 Male, age 18, unknown 255.3
2409 Female, age 72, unknown 255.1
1941 Male, age 53, unknown 252.7
1916 Female, age 42, unknown 245.2
2665 Male, age 74, both hemispheres 245.0
2241 Male, age 72, unknown 239.1
Superior colliculus
nTPM: 269.7
1913 Female, age 42, unknown 292.4
1995 Male, age 72, unknown 282.6
2664 Male, age 75, both hemispheres 278.8
2668 Female, age 75, unknown 273.6
1796 Male, age 53, unknown 268.0
1895 Male, age 76, right hemisphere 267.3
2261 Male, age 18, unknown 260.1
1839 Male, age 51, unknown 259.6
2087 Female, age 72, unknown 258.0
2587 Male, age 74, left hemisphere 257.0
Ventral tegmental area
nTPM: 260.7
2223 Female, age 72, unknown 276.3
2410 Female, age 72, unknown 265.5
2021 Male, age 53, unknown 262.1
1942 Male, age 51, unknown 257.1
1915 Female, age 42, unknown 252.1
2218 Male, age 76, both hemispheres 250.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 231.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 231.8
Samples: 139

Max nTPM: 734.3
Min nTPM: 115.2
Std nTPM: 95.1
Median nTPM: 203.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 734.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 587.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 494.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 490.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 490.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 487.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 481.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 400.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 390.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 387.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 385.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 480.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 480.1
FF:10158-103A5 76 years, female 480.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.4
Pig sample Sample description nTPM
Midbrain
nTPM: 99.8
Samples: 4

Max nTPM: 138.1
Min nTPM: 79.5
Sample A Female 138.1
Sample B Female 98.8
Sample C Male 82.9
Sample D Male 79.5
Periaqueductal gray
nTPM: 80.9
Samples: 3

Max nTPM: 88.8
Min nTPM: 75.6
Sample B Female 88.8
Sample C Male 75.6
Sample D Male 78.3
Substantia nigra
nTPM: 100.5
Samples: 4

Max nTPM: 115.3
Min nTPM: 72.7
Sample A Female 113.7
Sample B Female 72.7
Sample C Male 100.1
Sample D Male 115.3
Superior colliculi
nTPM: 87.5
Samples: 4

Max nTPM: 101.4
Min nTPM: 54.8
Sample A Female 96.2
Sample B Female 54.8
Sample C Male 97.6
Sample D Male 101.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.2
Samples: 4

Max nTPM: 100.8
Min nTPM: 92.4
Sample A Male 98.1
Sample B Male 92.4
Sample C Female 93.5
Sample D Female 100.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
564753 Antisense, RP_040826_01_C09, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.