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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:112.4 nTPM
HPA:112.4 nTPM
GTEx:93.0 nTPM
FANTOM5:144.2 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:100.4 nTPM
Allen mouse:13.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 112.4
Sample id Sample description nTPM
Amygdala
nTPM: 112.4
2514 Male, age 75, right hemisphere 127.0
2695 Female, age 67, right hemisphere 122.3
1987 Female, age 91, left hemisphere 112.9
2814 Male, age 76, right hemisphere 103.6
2517 Female, age 94, left hemisphere 96.4
Basal amygdala
nTPM: 102.6
2609 Male, age 75, right hemisphere 148.0
2243 Female, age 91, right hemisphere 103.4
2110 Male, age 80, left hemisphere 100.9
1955 Male, age 76, both hemispheres 94.5
2685 Female, age 94, left hemisphere 87.8
2827 Female, age 67, right hemisphere 80.8
Central amygdala
nTPM: 105.9
2515 Male, age 75, right hemisphere 130.7
2826 Female, age 94, left hemisphere 110.3
1905 Male, age 76, both hemispheres 106.3
2239 Male, age 80, left hemisphere 93.1
2701 Female, age 91, right hemisphere 88.9
Corticomedial amygdala
nTPM: 106.8
2428 Male, age 75, right hemisphere 149.3
2829 Male, age 80, left hemisphere 110.0
2242 Female, age 91, right hemisphere 102.5
2240 Male, age 76, both hemispheres 102.4
2429 Female, age 94, left hemisphere 97.1
2535 Female, age 67, right hemisphere 79.7
Lateral amygdala
nTPM: 101.0
2516 Male, age 75, right hemisphere 136.8
1883 Male, age 76, both hemispheres 108.9
2534 Female, age 94, left hemisphere 95.0
2255 Female, age 91, right hemisphere 90.9
2830 Female, age 67, right hemisphere 90.1
2256 Male, age 80, left hemisphere 84.6
Stria terminalis, bed nucleus
nTPM: 96.8
1974 Female, age 91, both hemispheres 105.7
2201 Male, age 74, unknown 94.1
2486 Female, age 94, both hemispheres 90.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 93.0
Samples: 152

Max nTPM: 144.1
Min nTPM: 13.7
Std nTPM: 19.2
Median nTPM: 93.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 144.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 140.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 135.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 129.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 128.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 128.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 124.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 124.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 123.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 120.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 119.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 118.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 116.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 116.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 114.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 113.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 112.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 111.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 111.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 111.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 111.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 109.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 109.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 108.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 107.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 107.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 107.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 106.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 106.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 105.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 105.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 105.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 105.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 104.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 103.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 103.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 102.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 102.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 102.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 102.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 102.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 101.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 101.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 101.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 101.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 101.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 100.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 100.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 99.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 99.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 97.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 97.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 97.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 96.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 95.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 93.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 93.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 93.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 93.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 92.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 92.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 91.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 91.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 91.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 90.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 90.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 88.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 87.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 87.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 87.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 87.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 87.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 86.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 86.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 86.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 84.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 83.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 83.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 83.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 83.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 83.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 83.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 82.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 81.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 80.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 80.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 80.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 79.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 78.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 78.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 76.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 76.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 76.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 75.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 75.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 75.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 75.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 74.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 74.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 74.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 74.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 74.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 73.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 73.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 71.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 71.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 69.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 67.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 67.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 65.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 62.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 60.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 60.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 58.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 54.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 51.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 51.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 144.2
FF:10151-102I7 76 years, female 144.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.0
Pig sample Sample description nTPM
Amygdala
nTPM: 63.0
Samples: 4

Max nTPM: 80.9
Min nTPM: 50.7
Sample A Female 80.9
Sample B Female 50.7
Sample C Male 59.6
Sample D Male 60.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.4
Samples: 4

Max nTPM: 110.0
Min nTPM: 90.5
Sample A Male 110.0
Sample B Male 99.6
Sample C Female 101.5
Sample D Female 90.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.1
74357551 Antisense, RP_051214_01_B03, Mouse strain C57BL/6J (56 days, male) 16.1
68795416 Antisense, RP_041122_01_C04, Mouse strain C57BL/6J (56 days, male) 10.1

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