MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:159.0 nTPM
HPA:159.0 nTPM
GTEx:133.1 nTPM
FANTOM5:131.8 Scaled Tags Per Million
Pig:79.8 nTPM
Mouse:106.3 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 159.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.8
2219 Male, age 76, both hemispheres 122.3
2586 Male, age 75, left hemisphere 112.7
2828 Female, age 72, unknown 109.9
1827 Male, age 72, unknown 108.8
2019 Male, age 18, unknown 108.8
1870 Female, age 42, unknown 104.4
2411 Female, age 72, unknown 102.9
1833 Male, age 53, unknown 99.7
1830 Male, age 51, unknown 94.2
2666 Male, age 74, left hemisphere 93.9
Dorsal raphe nucleus
nTPM: 107.2
2298 Female, age 72, unknown 110.9
2750 Male, age 76, both hemispheres 109.0
1828 Male, age 53, unknown 107.8
2047 Male, age 72, unknown 104.8
2016 Female, age 72, unknown 103.5
Inferior colliculus
nTPM: 102.2
1890 Male, age 53, unknown 114.6
2097 Female, age 72, unknown 104.0
1848 Female, age 42, unknown 95.6
2849 Male, age 72, unknown 94.6
Median raphe nucleus
nTPM: 107.5
2220 Male, age 76, midline 107.5
Pedunculopontine tegmental nucleus
nTPM: 95.5
2334 Male, age 80, both hemispheres 104.4
1921 Female, age 85, both hemispheres 99.4
2338 Male, age 61, both hemispheres 82.5
Periaquaductal grey, anterior
nTPM: 91.2
2502 Female, age 75, unknown 108.3
1795 Male, age 51, unknown 91.2
1947 Male, age 18, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 98.2
1840 Male, age 53, unknown 108.1
1831 Male, age 72, unknown 98.9
2464 Female, age 72, unknown 93.8
2850 Male, age 76, both hemispheres 92.0
Periaquaductal grey, lateral
nTPM: 92.0
2053 Male, age 18, unknown 97.9
2140 Male, age 76, both hemispheres 92.7
2272 Male, age 74, both hemispheres 85.3
Pretectal area
nTPM: 105.9
1944 Female, age 72, unknown 120.3
1816 Male, age 51, unknown 115.2
2667 Female, age 75, unknown 113.2
1815 Male, age 53, unknown 112.6
2007 Male, age 72, unknown 109.9
1817 Female, age 42, unknown 103.2
2407 Male, age 75, both hemispheres 100.7
2224 Female, age 72, unknown 100.3
2825 Male, age 18, unknown 100.0
2273 Male, age 74, both hemispheres 97.5
2316 Male, age 76, right hemisphere 92.6
Red nucleus
nTPM: 102.1
1821 Female, age 72, unknown 119.6
2588 Male, age 74, left hemisphere 106.7
2785 Male, age 18, unknown 106.2
2503 Female, age 72, unknown 105.2
2584 Male, age 75, left hemisphere 101.9
2227 Male, age 72, unknown 101.5
1904 Male, age 53, unknown 99.8
1865 Male, age 51, unknown 99.2
2769 Male, age 72, unknown 99.1
1954 Female, age 42, unknown 96.9
2823 Male, age 76, right hemisphere 96.5
2725 Female, age 75, unknown 92.4
Substantia nigra
nTPM: 159.0
1916 Female, age 42, unknown 239.4
1851 Male, age 51, unknown 188.9
2241 Male, age 72, unknown 180.4
2699 Male, age 18, unknown 178.0
2409 Female, age 72, unknown 146.3
1941 Male, age 53, unknown 143.3
2665 Male, age 74, both hemispheres 138.4
2583 Male, age 75, right hemisphere 128.3
2590 Female, age 75, unknown 124.1
1889 Female, age 72, unknown 123.2
Superior colliculus
nTPM: 102.4
2087 Female, age 72, unknown 113.7
1796 Male, age 53, unknown 109.7
2668 Female, age 75, unknown 107.7
2587 Male, age 74, left hemisphere 106.4
2664 Male, age 75, both hemispheres 102.9
2261 Male, age 18, unknown 101.2
1895 Male, age 76, right hemisphere 98.0
1839 Male, age 51, unknown 97.2
1913 Female, age 42, unknown 94.5
1995 Male, age 72, unknown 93.1
Ventral tegmental area
nTPM: 134.8
1915 Female, age 42, unknown 161.2
2410 Female, age 72, unknown 150.6
2218 Male, age 76, both hemispheres 142.7
2223 Female, age 72, unknown 125.2
1942 Male, age 51, unknown 120.9
2021 Male, age 53, unknown 108.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 133.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 133.1
Samples: 139

Max nTPM: 234.0
Min nTPM: 73.0
Std nTPM: 27.6
Median nTPM: 131.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 234.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 205.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 203.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 199.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 190.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 185.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 184.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 182.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 178.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 178.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 176.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.8
FF:10158-103A5 76 years, female 131.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.8
Pig sample Sample description nTPM
Midbrain
nTPM: 79.8
Samples: 4

Max nTPM: 91.8
Min nTPM: 60.0
Sample A Female 90.1
Sample B Female 60.0
Sample C Male 91.8
Sample D Male 77.2
Periaqueductal gray
nTPM: 52.7
Samples: 3

Max nTPM: 58.1
Min nTPM: 46.5
Sample B Female 53.5
Sample C Male 58.1
Sample D Male 46.5
Substantia nigra
nTPM: 71.8
Samples: 4

Max nTPM: 89.9
Min nTPM: 49.5
Sample A Female 89.5
Sample B Female 49.5
Sample C Male 89.9
Sample D Male 58.1
Superior colliculi
nTPM: 74.3
Samples: 4

Max nTPM: 94.5
Min nTPM: 49.5
Sample A Female 75.0
Sample B Female 49.5
Sample C Male 94.5
Sample D Male 78.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 115.2
Min nTPM: 97.4
Sample A Male 97.4
Sample B Male 105.3
Sample C Female 115.2
Sample D Female 107.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
74357551 Antisense, RP_051214_01_B03, Mouse strain C57BL/6J (56 days, male) 10.4
68795416 Antisense, RP_041122_01_C04, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.