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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:240.2 nTPM
HPA:240.2 nTPM
GTEx:237.8 nTPM
FANTOM5:225.1 Scaled Tags Per Million
Pig:255.8 nTPM
Mouse:250.6 nTPM
Allen mouse:18.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA047820Antibody CAB035994
Glial cells LowNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 240.2
Sample id Sample description nTPM
Hippocampus
nTPM: 236.3
1898 Male, age 80, left hemisphere 256.0
1855 Male, age 76, left hemisphere 240.0
2621 Female, age 67, right hemisphere 235.3
1911 Female, age 85, right hemisphere 234.6
2529 Female, age 94, left hemisphere 227.1
2148 Female, age 91, left hemisphere 224.8
Dentate gyrus
nTPM: 230.9
2010 Male, age 76, both hemispheres 254.1
2530 Female, age 94, left hemisphere 242.9
1927 Female, age 91, both hemispheres 237.3
2246 Female, age 85, both hemispheres 222.2
2528 Male, age 74, both hemispheres 218.1
2531 Female, age 67, both hemispheres 210.9
Entorhinal gyrus
nTPM: 230.2
2764 Male, age 80, right hemisphere 240.0
1938 Female, age 85, left hemisphere 235.0
2117 Female, age 91, right hemisphere 233.5
1787 Male, age 76, left hemisphere 233.2
2686 Male, age 75, right hemisphere 220.8
2613 Female, age 94, left hemisphere 218.8
Hippocampus, CA1
nTPM: 240.2
2749 Male, age 80, left hemisphere 290.3
1873 Female, age 85, both hemispheres 251.6
2045 Male, age 76, both hemispheres 227.4
2527 Male, age 74, both hemispheres 221.7
2082 Female, age 91, right hemisphere 210.2
Hippocampus, CA2
nTPM: 238.2
1963 Male, age 80, left hemisphere 261.2
1892 Male, age 76, both hemispheres 254.4
2249 Male, age 74, both hemispheres 241.9
1940 Female, age 85, left hemisphere 236.8
2437 Female, age 94, left hemisphere 222.5
2113 Female, age 91, right hemisphere 212.7
Hippocampus, CA3
nTPM: 229.7
2137 Male, age 80, left hemisphere 265.8
1867 Male, age 76, both hemispheres 247.5
1891 Female, age 85, both hemispheres 231.7
2620 Female, age 94, left hemisphere 216.7
2436 Male, age 74, both hemispheres 208.4
2861 Female, age 67, both hemispheres 208.1
Parahippocampal cortex
nTPM: 225.1
1990 Female, age 91, right hemisphere 237.8
1850 Male, age 80, both hemispheres 235.7
2018 Male, age 76, both hemispheres 233.6
1933 Female, age 85, both hemispheres 229.2
2532 Female, age 72, left hemisphere 229.0
2250 Female, age 67, right hemisphere 221.3
2245 Female, age 91, both hemispheres 221.1
2622 Female, age 67, right hemisphere 216.1
2692 Male, age 74, both hemispheres 214.0
2693 Female, age 94, both hemispheres 213.5
Perirhinal gyrus
nTPM: 231.3
1841 Female, age 85, right hemisphere 235.6
1794 Male, age 80, right hemisphere 234.6
1847 Female, age 91, left hemisphere 233.1
2848 Male, age 76, right hemisphere 230.3
2521 Female, age 94, right hemisphere 222.8
Subiculum
nTPM: 235.1
1901 Male, age 80, both hemispheres 246.5
2042 Male, age 76, both hemispheres 243.5
1977 Female, age 85, both hemispheres 240.0
2729 Female, age 91, right hemisphere 231.1
2438 Female, age 94, left hemisphere 228.8
2619 Male, age 74, both hemispheres 220.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 237.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 237.8
Samples: 197

Max nTPM: 473.9
Min nTPM: 138.6
Std nTPM: 49.6
Median nTPM: 227.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 473.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 428.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 422.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 378.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 370.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 366.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 346.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 333.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 330.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 329.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 327.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 323.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 313.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 309.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 303.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 301.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 299.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 297.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 296.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 296.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 296.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 292.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 289.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 289.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 287.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 285.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 284.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 284.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 283.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 282.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 281.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 280.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 280.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 279.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 278.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 277.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 277.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 275.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 274.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 274.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 272.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 272.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 270.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 269.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 269.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 268.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 267.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 265.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 262.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 262.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 260.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 259.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 259.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 258.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 256.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 254.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 254.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 252.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 251.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 251.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 250.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 249.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 249.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 248.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 248.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 248.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 248.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 248.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 246.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 244.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 244.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 244.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 244.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 240.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 240.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 240.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 239.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 239.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 239.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 239.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 239.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 239.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 238.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 238.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 238.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 236.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 235.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 235.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 234.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 233.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 233.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 232.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 232.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 231.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 230.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 230.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 229.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 228.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 227.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 227.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 226.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 225.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 225.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 225.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 224.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 224.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 224.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 223.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 223.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 222.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 222.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 222.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 222.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 221.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 221.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 221.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 220.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 219.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 218.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 218.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 218.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 217.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 217.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 217.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 217.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 216.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 216.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 215.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 214.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 214.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 214.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 214.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 214.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 213.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 213.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 212.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 211.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 210.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 209.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 208.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 208.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 206.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 205.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 204.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 204.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 203.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 203.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 203.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 203.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 203.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 202.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 202.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 202.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 202.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 201.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 201.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 200.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 200.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 200.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 199.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 199.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 198.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 197.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 197.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 196.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 195.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 194.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 192.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 191.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 191.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 191.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 187.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 187.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 187.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 186.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 185.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 185.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 184.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 184.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 183.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 183.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 181.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 179.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 179.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 178.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 178.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 177.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 176.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 174.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 172.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 171.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 169.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 168.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 165.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 160.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 150.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 138.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 225.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 225.1
FF:10169-103B7 60 years, female 263.6
FF:10153-102I9 76 years, female 186.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 255.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 255.8
Samples: 4

Max nTPM: 365.1
Min nTPM: 176.0
Sample A Female 365.1
Sample B Female 250.0
Sample C Male 232.2
Sample D Male 176.0
Entorhinal cortex
nTPM: 167.9
Samples: 4

Max nTPM: 182.6
Min nTPM: 139.6
Sample A Female 182.6
Sample B Female 167.9
Sample C Male 181.6
Sample D Male 139.6
Subiculum
nTPM: 196.6
Samples: 4

Max nTPM: 251.8
Min nTPM: 163.7
Sample A Female 251.8
Sample B Female 183.0
Sample C Male 187.9
Sample D Male 163.7
Ventral hippocampus
nTPM: 225.6
Samples: 4

Max nTPM: 269.1
Min nTPM: 160.9
Sample A Female 220.0
Sample B Female 160.9
Sample C Male 252.2
Sample D Male 269.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 250.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 229.2
Samples: 4

Max nTPM: 246.8
Min nTPM: 216.9
Sample A Male 223.0
Sample B Male 216.9
Sample C Female 230.0
Sample D Female 246.8
Hippocampal formation
nTPM: 250.6
Samples: 4

Max nTPM: 282.9
Min nTPM: 227.1
Sample A Male 248.2
Sample B Male 244.3
Sample C Female 282.9
Sample D Female 227.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.0
68191504 Antisense, RP_041129_01_C10, Mouse strain C57BL/6J (56 days, male) 18.0

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