MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:244.8 nTPM
HPA:244.8 nTPM
GTEx:268.0 nTPM
FANTOM5:222.1 Scaled Tags Per Million
Pig:223.9 nTPM
Mouse:229.9 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 244.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 236.5
1870 Female, age 42, unknown 245.8
2019 Male, age 18, unknown 244.5
2586 Male, age 75, left hemisphere 244.4
2666 Male, age 74, left hemisphere 243.9
2411 Female, age 72, unknown 238.8
1833 Male, age 53, unknown 234.8
1830 Male, age 51, unknown 234.6
2828 Female, age 72, unknown 230.9
1827 Male, age 72, unknown 226.9
2219 Male, age 76, both hemispheres 220.2
Dorsal raphe nucleus
nTPM: 231.1
2750 Male, age 76, both hemispheres 247.8
2016 Female, age 72, unknown 231.9
2047 Male, age 72, unknown 229.7
2298 Female, age 72, unknown 223.2
1828 Male, age 53, unknown 222.9
Inferior colliculus
nTPM: 226.3
1890 Male, age 53, unknown 230.6
2097 Female, age 72, unknown 230.2
1848 Female, age 42, unknown 224.4
2849 Male, age 72, unknown 220.1
Median raphe nucleus
nTPM: 220.6
2220 Male, age 76, midline 220.6
Pedunculopontine tegmental nucleus
nTPM: 230.6
2334 Male, age 80, both hemispheres 236.3
2338 Male, age 61, both hemispheres 230.2
1921 Female, age 85, both hemispheres 225.2
Periaquaductal grey, anterior
nTPM: 232.7
2502 Female, age 75, unknown 236.5
1947 Male, age 18, unknown 236.0
1795 Male, age 51, unknown 225.5
Periaquaductal grey, dorsal
nTPM: 220.5
2464 Female, age 72, unknown 226.1
1840 Male, age 53, unknown 219.9
2850 Male, age 76, both hemispheres 218.8
1831 Male, age 72, unknown 217.2
Periaquaductal grey, lateral
nTPM: 225.9
2272 Male, age 74, both hemispheres 229.8
2140 Male, age 76, both hemispheres 225.7
2053 Male, age 18, unknown 222.2
Pretectal area
nTPM: 230.9
2007 Male, age 72, unknown 246.6
1815 Male, age 53, unknown 241.0
1817 Female, age 42, unknown 239.9
1944 Female, age 72, unknown 236.3
2316 Male, age 76, right hemisphere 235.1
1816 Male, age 51, unknown 233.9
2224 Female, age 72, unknown 228.7
2273 Male, age 74, both hemispheres 227.0
2825 Male, age 18, unknown 219.8
2407 Male, age 75, both hemispheres 219.6
2667 Female, age 75, unknown 211.9
Red nucleus
nTPM: 244.8
2503 Female, age 72, unknown 257.2
2785 Male, age 18, unknown 254.1
2588 Male, age 74, left hemisphere 252.5
2769 Male, age 72, unknown 251.1
2227 Male, age 72, unknown 249.7
1904 Male, age 53, unknown 246.2
1821 Female, age 72, unknown 245.9
1865 Male, age 51, unknown 243.2
1954 Female, age 42, unknown 241.9
2725 Female, age 75, unknown 238.3
2584 Male, age 75, left hemisphere 229.0
2823 Male, age 76, right hemisphere 228.1
Substantia nigra
nTPM: 234.3
2590 Female, age 75, unknown 246.8
2665 Male, age 74, both hemispheres 238.9
1851 Male, age 51, unknown 238.1
1941 Male, age 53, unknown 236.5
1889 Female, age 72, unknown 236.1
1916 Female, age 42, unknown 235.1
2409 Female, age 72, unknown 230.8
2241 Male, age 72, unknown 228.7
2583 Male, age 75, right hemisphere 226.5
2699 Male, age 18, unknown 225.7
Superior colliculus
nTPM: 231.6
1913 Female, age 42, unknown 243.2
2668 Female, age 75, unknown 243.2
2587 Male, age 74, left hemisphere 241.1
2261 Male, age 18, unknown 236.2
1995 Male, age 72, unknown 232.0
1839 Male, age 51, unknown 230.1
1796 Male, age 53, unknown 226.9
1895 Male, age 76, right hemisphere 223.8
2087 Female, age 72, unknown 222.7
2664 Male, age 75, both hemispheres 216.9
Ventral tegmental area
nTPM: 234.8
2410 Female, age 72, unknown 241.1
2223 Female, age 72, unknown 239.5
1942 Male, age 51, unknown 238.0
1915 Female, age 42, unknown 233.0
2021 Male, age 53, unknown 230.4
2218 Male, age 76, both hemispheres 226.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 268.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 268.0
Samples: 139

Max nTPM: 565.6
Min nTPM: 161.4
Std nTPM: 74.0
Median nTPM: 260.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 565.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 493.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 471.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 446.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 436.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 411.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 394.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 394.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 391.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 391.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 383.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 222.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 222.1
FF:10158-103A5 76 years, female 222.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 223.9
Pig sample Sample description nTPM
Midbrain
nTPM: 223.9
Samples: 4

Max nTPM: 342.3
Min nTPM: 163.5
Sample A Female 342.3
Sample B Female 192.5
Sample C Male 197.3
Sample D Male 163.5
Periaqueductal gray
nTPM: 172.2
Samples: 3

Max nTPM: 186.5
Min nTPM: 158.7
Sample B Female 171.3
Sample C Male 186.5
Sample D Male 158.7
Substantia nigra
nTPM: 208.3
Samples: 4

Max nTPM: 239.5
Min nTPM: 178.3
Sample A Female 239.5
Sample B Female 178.3
Sample C Male 188.8
Sample D Male 226.6
Superior colliculi
nTPM: 197.0
Samples: 4

Max nTPM: 216.5
Min nTPM: 175.4
Sample A Female 216.5
Sample B Female 175.4
Sample C Male 197.5
Sample D Male 198.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 229.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 229.9
Samples: 4

Max nTPM: 239.4
Min nTPM: 221.7
Sample A Male 221.7
Sample B Male 224.9
Sample C Female 239.4
Sample D Female 233.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
68191504 Antisense, RP_041129_01_C10, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.