MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:39.8 nTPM
FANTOM5:176.3 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:15.2 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
2019 Male, age 18, unknown 48.2
2411 Female, age 72, unknown 46.1
2586 Male, age 75, left hemisphere 43.6
1830 Male, age 51, unknown 42.9
1833 Male, age 53, unknown 42.7
1870 Female, age 42, unknown 38.7
2219 Male, age 76, both hemispheres 38.6
2666 Male, age 74, left hemisphere 35.8
2828 Female, age 72, unknown 35.2
1827 Male, age 72, unknown 24.7
Dorsal raphe nucleus
nTPM: 30.1
2750 Male, age 76, both hemispheres 53.5
1828 Male, age 53, unknown 31.8
2047 Male, age 72, unknown 29.2
2016 Female, age 72, unknown 18.8
2298 Female, age 72, unknown 17.2
Inferior colliculus
nTPM: 20.4
1890 Male, age 53, unknown 24.2
2849 Male, age 72, unknown 22.1
1848 Female, age 42, unknown 20.5
2097 Female, age 72, unknown 14.9
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Pedunculopontine tegmental nucleus
nTPM: 39.0
2334 Male, age 80, both hemispheres 44.5
2338 Male, age 61, both hemispheres 39.8
1921 Female, age 85, both hemispheres 32.8
Periaquaductal grey, anterior
nTPM: 27.7
2502 Female, age 75, unknown 32.7
1947 Male, age 18, unknown 25.9
1795 Male, age 51, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 15.7
2464 Female, age 72, unknown 23.2
1831 Male, age 72, unknown 18.2
2850 Male, age 76, both hemispheres 12.8
1840 Male, age 53, unknown 8.4
Periaquaductal grey, lateral
nTPM: 15.9
2272 Male, age 74, both hemispheres 21.1
2053 Male, age 18, unknown 16.3
2140 Male, age 76, both hemispheres 10.2
Pretectal area
nTPM: 26.1
2007 Male, age 72, unknown 36.7
1815 Male, age 53, unknown 35.2
2407 Male, age 75, both hemispheres 35.1
1817 Female, age 42, unknown 33.6
2316 Male, age 76, right hemisphere 26.6
1944 Female, age 72, unknown 24.5
1816 Male, age 51, unknown 23.6
2825 Male, age 18, unknown 21.3
2667 Female, age 75, unknown 17.5
2224 Female, age 72, unknown 16.8
2273 Male, age 74, both hemispheres 16.6
Red nucleus
nTPM: 48.3
2823 Male, age 76, right hemisphere 60.7
2785 Male, age 18, unknown 54.3
1904 Male, age 53, unknown 54.2
1865 Male, age 51, unknown 52.8
2584 Male, age 75, left hemisphere 52.5
2588 Male, age 74, left hemisphere 50.3
2769 Male, age 72, unknown 47.9
2227 Male, age 72, unknown 46.1
2503 Female, age 72, unknown 43.9
1821 Female, age 72, unknown 40.3
1954 Female, age 42, unknown 38.4
2725 Female, age 75, unknown 37.9
Substantia nigra
nTPM: 35.3
1916 Female, age 42, unknown 47.6
2583 Male, age 75, right hemisphere 43.6
1851 Male, age 51, unknown 41.2
2590 Female, age 75, unknown 38.6
2699 Male, age 18, unknown 36.3
1889 Female, age 72, unknown 32.7
1941 Male, age 53, unknown 31.9
2409 Female, age 72, unknown 28.9
2665 Male, age 74, both hemispheres 26.2
2241 Male, age 72, unknown 26.0
Superior colliculus
nTPM: 30.8
2668 Female, age 75, unknown 40.8
1913 Female, age 42, unknown 38.3
1995 Male, age 72, unknown 36.6
1895 Male, age 76, right hemisphere 32.7
2587 Male, age 74, left hemisphere 31.0
1839 Male, age 51, unknown 29.1
1796 Male, age 53, unknown 27.9
2087 Female, age 72, unknown 24.2
2261 Male, age 18, unknown 23.9
2664 Male, age 75, both hemispheres 23.9
Ventral tegmental area
nTPM: 38.3
2223 Female, age 72, unknown 46.1
2410 Female, age 72, unknown 44.5
2218 Male, age 76, both hemispheres 42.6
1915 Female, age 42, unknown 35.0
1942 Male, age 51, unknown 32.3
2021 Male, age 53, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.8
Samples: 139

Max nTPM: 128.6
Min nTPM: 11.5
Std nTPM: 17.2
Median nTPM: 36.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 128.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 113.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 81.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 73.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 73.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 68.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 68.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 66.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 176.3
FF:10158-103A5 76 years, female 176.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.8
Pig sample Sample description nTPM
Midbrain
nTPM: 40.0
Samples: 4

Max nTPM: 62.9
Min nTPM: 24.5
Sample A Female 62.9
Sample B Female 31.5
Sample C Male 40.9
Sample D Male 24.5
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 25.0
Min nTPM: 17.9
Sample B Female 24.0
Sample C Male 25.0
Sample D Male 17.9
Substantia nigra
nTPM: 41.8
Samples: 4

Max nTPM: 55.6
Min nTPM: 24.2
Sample A Female 55.6
Sample B Female 24.2
Sample C Male 50.6
Sample D Male 36.7
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 14.9
Sample A Female 34.3
Sample B Female 14.9
Sample C Male 41.6
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.5
Sample A Male 15.3
Sample B Male 14.5
Sample C Female 16.1
Sample D Female 15.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70565867 Antisense, RP_050628_01_E07, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.