MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA:62.8 nTPM
GTEx:83.5 nTPM
FANTOM5:40.1 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:40.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.5
2586 Male, age 75, left hemisphere 77.3
2019 Male, age 18, unknown 65.3
2666 Male, age 74, left hemisphere 65.3
2219 Male, age 76, both hemispheres 62.9
2828 Female, age 72, unknown 58.0
2411 Female, age 72, unknown 57.4
1827 Male, age 72, unknown 56.8
1870 Female, age 42, unknown 56.0
1833 Male, age 53, unknown 53.5
1830 Male, age 51, unknown 53.0
Dorsal raphe nucleus
nTPM: 58.1
1828 Male, age 53, unknown 63.3
2047 Male, age 72, unknown 59.5
2750 Male, age 76, both hemispheres 58.0
2298 Female, age 72, unknown 57.5
2016 Female, age 72, unknown 52.5
Inferior colliculus
nTPM: 57.5
2097 Female, age 72, unknown 60.1
1890 Male, age 53, unknown 59.6
1848 Female, age 42, unknown 55.8
2849 Male, age 72, unknown 54.4
Median raphe nucleus
nTPM: 61.8
2220 Male, age 76, midline 61.8
Pedunculopontine tegmental nucleus
nTPM: 58.9
2334 Male, age 80, both hemispheres 61.8
1921 Female, age 85, both hemispheres 59.8
2338 Male, age 61, both hemispheres 55.1
Periaquaductal grey, anterior
nTPM: 57.7
1795 Male, age 51, unknown 58.8
2502 Female, age 75, unknown 58.0
1947 Male, age 18, unknown 56.4
Periaquaductal grey, dorsal
nTPM: 52.9
1840 Male, age 53, unknown 56.4
1831 Male, age 72, unknown 52.8
2464 Female, age 72, unknown 52.3
2850 Male, age 76, both hemispheres 50.2
Periaquaductal grey, lateral
nTPM: 48.6
2140 Male, age 76, both hemispheres 48.9
2053 Male, age 18, unknown 48.6
2272 Male, age 74, both hemispheres 48.4
Pretectal area
nTPM: 60.3
2007 Male, age 72, unknown 77.4
1817 Female, age 42, unknown 73.4
1944 Female, age 72, unknown 73.1
1816 Male, age 51, unknown 70.2
1815 Male, age 53, unknown 60.8
2667 Female, age 75, unknown 55.8
2407 Male, age 75, both hemispheres 54.2
2825 Male, age 18, unknown 51.9
2224 Female, age 72, unknown 50.7
2273 Male, age 74, both hemispheres 48.6
2316 Male, age 76, right hemisphere 47.3
Red nucleus
nTPM: 58.0
2785 Male, age 18, unknown 67.5
2588 Male, age 74, left hemisphere 61.4
2584 Male, age 75, left hemisphere 59.4
1821 Female, age 72, unknown 58.9
2769 Male, age 72, unknown 58.7
2725 Female, age 75, unknown 58.0
1954 Female, age 42, unknown 57.5
2503 Female, age 72, unknown 57.3
2227 Male, age 72, unknown 56.6
1865 Male, age 51, unknown 55.8
1904 Male, age 53, unknown 53.4
2823 Male, age 76, right hemisphere 51.9
Substantia nigra
nTPM: 62.8
1916 Female, age 42, unknown 70.8
2665 Male, age 74, both hemispheres 70.7
1889 Female, age 72, unknown 67.0
1851 Male, age 51, unknown 66.1
1941 Male, age 53, unknown 63.4
2583 Male, age 75, right hemisphere 63.1
2590 Female, age 75, unknown 57.1
2699 Male, age 18, unknown 57.0
2241 Male, age 72, unknown 56.9
2409 Female, age 72, unknown 56.0
Superior colliculus
nTPM: 57.2
2087 Female, age 72, unknown 65.3
2668 Female, age 75, unknown 64.0
2664 Male, age 75, both hemispheres 61.3
1796 Male, age 53, unknown 57.8
2261 Male, age 18, unknown 57.2
1913 Female, age 42, unknown 55.6
1895 Male, age 76, right hemisphere 54.1
1995 Male, age 72, unknown 53.2
1839 Male, age 51, unknown 53.1
2587 Male, age 74, left hemisphere 50.7
Ventral tegmental area
nTPM: 60.1
1915 Female, age 42, unknown 63.4
2218 Male, age 76, both hemispheres 63.1
2410 Female, age 72, unknown 62.8
1942 Male, age 51, unknown 59.6
2223 Female, age 72, unknown 56.2
2021 Male, age 53, unknown 55.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.5
Samples: 139

Max nTPM: 180.8
Min nTPM: 30.7
Std nTPM: 27.5
Median nTPM: 80.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 159.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 151.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 143.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 140.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 136.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 134.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 132.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 132.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 129.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.1
FF:10158-103A5 76 years, female 40.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.4
Sample A Female 13.4
Sample B Female 12.4
Sample C Male 17.3
Sample D Male 13.7
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 11.9
Min nTPM: 9.2
Sample B Female 11.7
Sample C Male 11.9
Sample D Male 9.2
Substantia nigra
nTPM: 14.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 12.2
Sample A Female 15.3
Sample B Female 13.2
Sample C Male 15.8
Sample D Male 12.2
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 19.6
Min nTPM: 12.4
Sample A Female 16.2
Sample B Female 12.4
Sample C Male 19.6
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 42.6
Min nTPM: 36.8
Sample A Male 42.6
Sample B Male 39.3
Sample C Female 36.8
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
71608344 Antisense, RP_050927_01_D12, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.