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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:71.5 nTPM
HPA:71.5 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:69.4 nTPM
Allen mouse:5.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 71.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 62.3
2032 Female, age 42, unknown 69.9
2497 Male, age 66, unknown 63.2
2396 Male, age 61, right hemisphere 53.8
Centromedial thalamic nucleus
nTPM: 65.2
2401 Male, age 76, right hemisphere 76.6
2279 Female, age 85, left hemisphere 53.7
Habenula
nTPM: 64.6
2203 Male, age 61, left hemisphere 70.4
1957 Male, age 80, both hemispheres 66.8
2276 Male, age 66, unknown 61.9
2252 Male, age 62, unknown 59.3
Lateral geniculate body
nTPM: 71.5
2106 Female, age 67, right hemisphere 91.5
2035 Female, age 72, unknown 79.1
1953 Male, age 62, unknown 75.8
2399 Male, age 61, left hemisphere 75.5
2857 Male, age 74, right hemisphere 70.3
2659 Male, age 66, unknown 64.0
2841 Male, age 80, both hemispheres 58.3
2575 Female, age 94, right hemisphere 57.1
Lateral thalamic nuclei
nTPM: 63.8
2661 Female, age 72, unknown 71.4
2577 Male, age 74, both hemispheres 66.9
1903 Male, age 76, left hemisphere 65.3
2573 Female, age 94, left hemisphere 58.1
2765 Female, age 67, both hemispheres 57.5
Medial dorsal thalamic nucleus
nTPM: 65.6
1859 Male, age 76, both hemispheres 76.1
1810 Male, age 48, unknown 72.8
1971 Male, age 61, right hemisphere 69.6
2498 Male, age 66, unknown 68.1
2576 Male, age 74, both hemispheres 67.8
2026 Male, age 62, unknown 67.4
2283 Male, age 80, right hemisphere 66.3
2492 Male, age 75, right hemisphere 65.8
2660 Female, age 72, unknown 65.4
1930 Female, age 42, unknown 63.3
2572 Female, age 94, right hemisphere 61.7
2039 Female, age 72, unknown 55.7
2402 Female, age 67, both hemispheres 52.4
Medial geniculate body
nTPM: 62.9
1811 Female, age 42, unknown 68.6
2571 Male, age 75, right hemisphere 67.0
2207 Male, age 80, right hemisphere 65.3
2657 Male, age 74, right hemisphere 65.2
2650 Female, age 94, left hemisphere 61.7
2217 Female, age 72, unknown 59.0
2049 Male, age 76, both hemispheres 53.6
Nucleus reuniens
nTPM: 56.3
2212 Female, age 67, left hemisphere 57.5
2210 Female, age 85, left hemisphere 57.1
2205 Male, age 80, left hemisphere 54.2
Nucleus rhomboideus
nTPM: 58.8
2206 Male, age 80, both hemispheres 67.1
2280 Female, age 85, left hemisphere 58.4
2213 Female, age 67, left hemisphere 50.9
Posterior thalamic nucleus
nTPM: 66.5
2266 Male, age 76, right hemisphere 72.8
2655 Male, age 74, right hemisphere 70.6
2649 Female, age 94, both hemispheres 65.7
2495 Female, age 67, right hemisphere 56.9
Pulvinar
nTPM: 69.0
1972 Male, age 62, unknown 77.8
1932 Male, age 80, right hemisphere 74.3
2398 Male, age 61, left hemisphere 73.6
1899 Female, age 42, unknown 69.0
2582 Female, age 72, unknown 68.1
2499 Male, age 66, unknown 66.3
2724 Male, age 74, right hemisphere 65.8
1929 Male, age 48, unknown 65.5
2496 Female, age 67, right hemisphere 65.2
2214 Male, age 76, right hemisphere 64.1
Subthalamic nucleus
nTPM: 60.6
2658 Male, age 74, both hemispheres 72.3
2275 Male, age 66, unknown 65.0
2282 Male, age 61, both hemispheres 62.7
2124 Male, age 62, unknown 60.7
2406 Female, age 72, unknown 58.9
2779 Female, age 42, unknown 58.1
2056 Female, age 72, unknown 55.0
2216 Male, age 48, unknown 52.3
Ventral posterolateral thalamic nucleus
nTPM: 71.4
2740 Male, age 76, right hemisphere 89.1
2581 Female, age 72, unknown 74.7
2578 Male, age 74, both hemispheres 67.6
2197 Male, age 80, both hemispheres 66.9
2397 Male, age 61, right hemisphere 65.7
2570 Male, age 75, right hemisphere 64.4
Ventral posteromedial thalamic nucleus
nTPM: 66.8
2202 Male, age 61, left hemisphere 75.7
2653 Male, age 74, both hemispheres 71.2
2758 Male, age 80, both hemispheres 69.9
2281 Male, age 75, right hemisphere 63.8
2127 Male, age 76, right hemisphere 53.7
Ventral thalamic nuclei
nTPM: 66.3
2858 Female, age 72, unknown 78.7
1860 Male, age 76, both hemispheres 77.3
1845 Male, age 48, unknown 73.5
1912 Female, age 42, unknown 65.7
2580 Male, age 66, unknown 62.5
2652 Male, age 74, left hemisphere 62.1
2204 Male, age 80, both hemispheres 60.8
2285 Male, age 62, unknown 60.4
2291 Female, age 72, unknown 56.1
Ventromedial nucleus
nTPM: 54.2
1982 Female, age 72, unknown 58.3
1822 Female, age 42, unknown 50.1
Zona incerta
nTPM: 59.0
2822 Male, age 74, right hemisphere 65.9
2215 Male, age 66, unknown 62.3
2208 Male, age 80, right hemisphere 58.3
2663 Female, age 72, unknown 57.8
2403 Male, age 62, unknown 50.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 32.3
FF:10154-103A1 76 years, female 32.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.7
Pig sample Sample description nTPM
Thalamus
nTPM: 16.7
Samples: 4

Max nTPM: 20.6
Min nTPM: 12.7
Sample A Female 17.5
Sample B Female 16.0
Sample C Male 20.6
Sample D Male 12.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 69.5
Samples: 4

Max nTPM: 77.5
Min nTPM: 65.3
Sample A Male 65.3
Sample B Male 68.1
Sample C Female 77.5
Sample D Female 66.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 5.0
71608344 Antisense, RP_050927_01_D12, Mouse strain C57BL/6J (56 days, male) 5.0

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