MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:194.8 nTPM
HPA:194.8 nTPM
GTEx:194.3 nTPM
FANTOM5:361.7 Scaled Tags Per Million
Pig:166.3 nTPM
Mouse:180.2 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 194.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.1
2586 Male, age 75, left hemisphere 215.9
1830 Male, age 51, unknown 185.9
2411 Female, age 72, unknown 182.9
1833 Male, age 53, unknown 180.0
2666 Male, age 74, left hemisphere 178.5
1870 Female, age 42, unknown 171.9
2019 Male, age 18, unknown 171.6
2828 Female, age 72, unknown 171.3
1827 Male, age 72, unknown 162.6
2219 Male, age 76, both hemispheres 140.9
Dorsal raphe nucleus
nTPM: 144.2
2750 Male, age 76, both hemispheres 185.2
1828 Male, age 53, unknown 143.1
2016 Female, age 72, unknown 137.9
2047 Male, age 72, unknown 128.7
2298 Female, age 72, unknown 126.2
Inferior colliculus
nTPM: 142.0
2849 Male, age 72, unknown 147.7
1890 Male, age 53, unknown 143.2
1848 Female, age 42, unknown 140.1
2097 Female, age 72, unknown 137.1
Median raphe nucleus
nTPM: 133.1
2220 Male, age 76, midline 133.1
Pedunculopontine tegmental nucleus
nTPM: 150.1
2334 Male, age 80, both hemispheres 156.3
2338 Male, age 61, both hemispheres 147.7
1921 Female, age 85, both hemispheres 146.2
Periaquaductal grey, anterior
nTPM: 147.1
1947 Male, age 18, unknown 153.6
1795 Male, age 51, unknown 145.2
2502 Female, age 75, unknown 142.4
Periaquaductal grey, dorsal
nTPM: 129.1
2464 Female, age 72, unknown 154.7
1831 Male, age 72, unknown 137.0
1840 Male, age 53, unknown 120.6
2850 Male, age 76, both hemispheres 104.0
Periaquaductal grey, lateral
nTPM: 131.9
2272 Male, age 74, both hemispheres 140.5
2053 Male, age 18, unknown 140.4
2140 Male, age 76, both hemispheres 115.0
Pretectal area
nTPM: 155.3
2407 Male, age 75, both hemispheres 185.4
2316 Male, age 76, right hemisphere 179.1
1815 Male, age 53, unknown 176.0
2007 Male, age 72, unknown 170.7
1817 Female, age 42, unknown 159.1
2825 Male, age 18, unknown 151.4
1816 Male, age 51, unknown 149.3
1944 Female, age 72, unknown 145.4
2667 Female, age 75, unknown 134.7
2224 Female, age 72, unknown 131.1
2273 Male, age 74, both hemispheres 126.5
Red nucleus
nTPM: 194.8
2823 Male, age 76, right hemisphere 211.9
1904 Male, age 53, unknown 209.9
2503 Female, age 72, unknown 207.6
2584 Male, age 75, left hemisphere 205.0
1865 Male, age 51, unknown 203.1
2227 Male, age 72, unknown 194.8
2785 Male, age 18, unknown 194.2
2588 Male, age 74, left hemisphere 192.3
2769 Male, age 72, unknown 191.1
2725 Female, age 75, unknown 179.6
1821 Female, age 72, unknown 175.9
1954 Female, age 42, unknown 172.9
Substantia nigra
nTPM: 163.5
2583 Male, age 75, right hemisphere 198.3
2590 Female, age 75, unknown 190.5
1851 Male, age 51, unknown 168.4
2409 Female, age 72, unknown 162.7
2665 Male, age 74, both hemispheres 159.3
1889 Female, age 72, unknown 158.5
2699 Male, age 18, unknown 157.4
1916 Female, age 42, unknown 154.9
1941 Male, age 53, unknown 149.1
2241 Male, age 72, unknown 136.1
Superior colliculus
nTPM: 173.2
1995 Male, age 72, unknown 198.6
1913 Female, age 42, unknown 194.0
2668 Female, age 75, unknown 189.7
1895 Male, age 76, right hemisphere 188.0
1796 Male, age 53, unknown 167.9
2664 Male, age 75, both hemispheres 164.6
1839 Male, age 51, unknown 161.4
2261 Male, age 18, unknown 160.8
2587 Male, age 74, left hemisphere 159.1
2087 Female, age 72, unknown 148.3
Ventral tegmental area
nTPM: 152.7
2410 Female, age 72, unknown 176.8
2223 Female, age 72, unknown 154.2
1915 Female, age 42, unknown 153.5
1942 Male, age 51, unknown 147.2
2218 Male, age 76, both hemispheres 144.0
2021 Male, age 53, unknown 140.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 194.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 194.3
Samples: 139

Max nTPM: 518.0
Min nTPM: 86.2
Std nTPM: 73.4
Median nTPM: 179.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 518.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 488.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 481.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 430.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 370.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 370.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 348.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 311.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 299.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 295.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 293.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 361.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 361.7
FF:10158-103A5 76 years, female 361.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 166.3
Pig sample Sample description nTPM
Midbrain
nTPM: 166.3
Samples: 4

Max nTPM: 244.0
Min nTPM: 125.1
Sample A Female 244.0
Sample B Female 163.1
Sample C Male 132.9
Sample D Male 125.1
Periaqueductal gray
nTPM: 125.6
Samples: 3

Max nTPM: 134.8
Min nTPM: 119.3
Sample B Female 134.8
Sample C Male 119.3
Sample D Male 122.8
Substantia nigra
nTPM: 165.4
Samples: 4

Max nTPM: 233.4
Min nTPM: 111.1
Sample A Female 161.2
Sample B Female 111.1
Sample C Male 155.8
Sample D Male 233.4
Superior colliculi
nTPM: 143.2
Samples: 4

Max nTPM: 171.7
Min nTPM: 87.7
Sample A Female 143.4
Sample B Female 87.7
Sample C Male 169.9
Sample D Male 171.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 180.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.2
Samples: 4

Max nTPM: 189.4
Min nTPM: 169.7
Sample A Male 189.4
Sample B Male 169.7
Sample C Female 181.2
Sample D Female 180.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
69529292 Antisense, RP_050421_03_H11, Mouse strain C57BL/6J (56 days, male) 16.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.