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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:26.8 nTPM
HPA:26.8 nTPM
GTEx:29.9 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:35.1 nTPM
Allen mouse:9.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 26.8
Sample id Sample description nTPM
Amygdala
nTPM: 15.7
2517 Female, age 94, left hemisphere 19.0
1987 Female, age 91, left hemisphere 15.8
2695 Female, age 67, right hemisphere 15.4
2514 Male, age 75, right hemisphere 14.8
2814 Male, age 76, right hemisphere 13.2
Basal amygdala
nTPM: 24.2
2827 Female, age 67, right hemisphere 36.9
2609 Male, age 75, right hemisphere 24.8
2685 Female, age 94, left hemisphere 24.1
2110 Male, age 80, left hemisphere 24.0
2243 Female, age 91, right hemisphere 19.4
1955 Male, age 76, both hemispheres 16.2
Central amygdala
nTPM: 25.2
2826 Female, age 94, left hemisphere 37.0
2239 Male, age 80, left hemisphere 28.5
2515 Male, age 75, right hemisphere 27.6
2701 Female, age 91, right hemisphere 19.8
1905 Male, age 76, both hemispheres 13.3
Corticomedial amygdala
nTPM: 20.8
2535 Female, age 67, right hemisphere 34.0
2428 Male, age 75, right hemisphere 21.4
2829 Male, age 80, left hemisphere 21.3
2429 Female, age 94, left hemisphere 20.0
2240 Male, age 76, both hemispheres 14.5
2242 Female, age 91, right hemisphere 13.4
Lateral amygdala
nTPM: 26.8
2830 Female, age 67, right hemisphere 37.8
2534 Female, age 94, left hemisphere 31.1
2256 Male, age 80, left hemisphere 27.6
2516 Male, age 75, right hemisphere 25.2
2255 Female, age 91, right hemisphere 24.2
1883 Male, age 76, both hemispheres 15.0
Stria terminalis, bed nucleus
nTPM: 23.4
2201 Male, age 74, unknown 25.0
2486 Female, age 94, both hemispheres 22.7
1974 Female, age 91, both hemispheres 22.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 29.9
Samples: 152

Max nTPM: 56.6
Min nTPM: 11.1
Std nTPM: 7.8
Median nTPM: 29.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 56.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 53.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 48.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 44.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 43.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 43.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 43.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 42.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 42.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 41.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 41.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 41.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 40.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 40.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 39.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 38.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 38.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 38.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 38.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 37.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 37.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 37.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 37.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 37.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 37.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 37.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 36.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 36.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 36.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 36.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 36.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 35.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 35.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 35.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 35.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 35.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 34.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 34.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 33.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 33.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 33.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 33.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 33.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 33.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 33.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 33.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 32.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 32.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 32.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 32.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 32.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 31.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 31.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 31.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 31.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 31.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 31.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 30.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 30.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 30.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 30.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 30.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 30.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 30.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 30.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 29.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 29.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 29.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 29.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 28.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 28.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 28.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 28.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 28.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 27.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 27.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 27.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 27.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 27.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 27.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 27.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 27.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 27.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 27.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 26.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 26.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 26.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 26.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 26.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 26.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 26.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 26.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 26.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 25.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 25.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 25.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 25.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 25.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 25.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 25.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 25.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 25.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 24.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 24.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 24.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 24.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 24.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 24.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 24.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 24.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 24.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 23.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 23.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 23.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 23.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 23.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 23.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 23.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 22.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 22.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 21.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 20.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 20.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 18.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 18.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 18.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 18.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 17.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 17.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 17.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 16.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 16.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 16.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 16.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 15.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 14.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 11.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.5
FF:10151-102I7 76 years, female 46.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.6
Pig sample Sample description nTPM
Amygdala
nTPM: 19.7
Samples: 4

Max nTPM: 23.0
Min nTPM: 16.2
Sample A Female 23.0
Sample B Female 17.4
Sample C Male 22.0
Sample D Male 16.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 35.1
Samples: 4

Max nTPM: 47.7
Min nTPM: 28.1
Sample A Male 28.1
Sample B Male 33.3
Sample C Female 47.7
Sample D Female 31.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.0
71496405 Antisense, RP_050913_04_E03, Mouse strain C57BL/6J (56 days, male) 9.0

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