MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:139.5 nTPM
HPA:139.5 nTPM
GTEx:134.6 nTPM
FANTOM5:106.1 Scaled Tags Per Million
Pig:107.9 nTPM
Mouse:282.9 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.8
2586 Male, age 75, left hemisphere 147.0
1827 Male, age 72, unknown 134.2
1870 Female, age 42, unknown 131.2
2411 Female, age 72, unknown 128.8
2019 Male, age 18, unknown 128.0
2666 Male, age 74, left hemisphere 127.9
1830 Male, age 51, unknown 127.4
2828 Female, age 72, unknown 126.2
1833 Male, age 53, unknown 125.5
2219 Male, age 76, both hemispheres 122.3
Dorsal raphe nucleus
nTPM: 133.7
2047 Male, age 72, unknown 139.0
1828 Male, age 53, unknown 136.9
2298 Female, age 72, unknown 134.9
2750 Male, age 76, both hemispheres 130.1
2016 Female, age 72, unknown 127.9
Inferior colliculus
nTPM: 128.7
2097 Female, age 72, unknown 129.8
1848 Female, age 42, unknown 128.7
1890 Male, age 53, unknown 128.5
2849 Male, age 72, unknown 127.9
Median raphe nucleus
nTPM: 129.0
2220 Male, age 76, midline 129.0
Pedunculopontine tegmental nucleus
nTPM: 129.4
2334 Male, age 80, both hemispheres 131.9
2338 Male, age 61, both hemispheres 131.2
1921 Female, age 85, both hemispheres 125.0
Periaquaductal grey, anterior
nTPM: 133.4
2502 Female, age 75, unknown 136.4
1947 Male, age 18, unknown 135.9
1795 Male, age 51, unknown 127.9
Periaquaductal grey, dorsal
nTPM: 125.2
1840 Male, age 53, unknown 128.7
2464 Female, age 72, unknown 128.7
2850 Male, age 76, both hemispheres 123.1
1831 Male, age 72, unknown 120.5
Periaquaductal grey, lateral
nTPM: 126.0
2053 Male, age 18, unknown 129.3
2272 Male, age 74, both hemispheres 126.5
2140 Male, age 76, both hemispheres 122.2
Pretectal area
nTPM: 130.3
1816 Male, age 51, unknown 134.6
1944 Female, age 72, unknown 134.4
2007 Male, age 72, unknown 133.2
2667 Female, age 75, unknown 133.1
1817 Female, age 42, unknown 132.9
2407 Male, age 75, both hemispheres 130.9
2273 Male, age 74, both hemispheres 129.4
2224 Female, age 72, unknown 128.9
2825 Male, age 18, unknown 128.9
1815 Male, age 53, unknown 128.8
2316 Male, age 76, right hemisphere 117.7
Red nucleus
nTPM: 127.9
1821 Female, age 72, unknown 136.1
1954 Female, age 42, unknown 130.6
2588 Male, age 74, left hemisphere 130.6
1865 Male, age 51, unknown 129.8
1904 Male, age 53, unknown 129.6
2584 Male, age 75, left hemisphere 127.6
2769 Male, age 72, unknown 127.2
2503 Female, age 72, unknown 126.5
2227 Male, age 72, unknown 125.3
2725 Female, age 75, unknown 124.8
2785 Male, age 18, unknown 124.3
2823 Male, age 76, right hemisphere 122.0
Substantia nigra
nTPM: 139.5
1916 Female, age 42, unknown 158.6
1851 Male, age 51, unknown 146.1
2241 Male, age 72, unknown 144.3
2699 Male, age 18, unknown 141.4
1941 Male, age 53, unknown 141.0
1889 Female, age 72, unknown 136.7
2665 Male, age 74, both hemispheres 135.2
2583 Male, age 75, right hemisphere 132.0
2409 Female, age 72, unknown 130.0
2590 Female, age 75, unknown 129.8
Superior colliculus
nTPM: 128.9
2664 Male, age 75, both hemispheres 135.6
2668 Female, age 75, unknown 134.7
2587 Male, age 74, left hemisphere 133.9
2087 Female, age 72, unknown 128.8
1796 Male, age 53, unknown 128.6
1839 Male, age 51, unknown 128.3
2261 Male, age 18, unknown 127.3
1895 Male, age 76, right hemisphere 125.4
1913 Female, age 42, unknown 124.4
1995 Male, age 72, unknown 122.0
Ventral tegmental area
nTPM: 134.2
1915 Female, age 42, unknown 143.7
2410 Female, age 72, unknown 139.0
2218 Male, age 76, both hemispheres 133.6
2223 Female, age 72, unknown 130.2
1942 Male, age 51, unknown 129.5
2021 Male, age 53, unknown 129.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.6
Samples: 139

Max nTPM: 278.7
Min nTPM: 86.3
Std nTPM: 31.3
Median nTPM: 127.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 278.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 226.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 224.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 208.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 207.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 207.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 203.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 198.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 197.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 195.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 194.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.1
FF:10158-103A5 76 years, female 106.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.9
Pig sample Sample description nTPM
Midbrain
nTPM: 107.9
Samples: 4

Max nTPM: 138.4
Min nTPM: 88.4
Sample A Female 138.4
Sample B Female 99.7
Sample C Male 105.0
Sample D Male 88.4
Periaqueductal gray
nTPM: 85.0
Samples: 3

Max nTPM: 97.5
Min nTPM: 73.8
Sample B Female 83.8
Sample C Male 97.5
Sample D Male 73.8
Substantia nigra
nTPM: 104.8
Samples: 4

Max nTPM: 134.2
Min nTPM: 83.2
Sample A Female 134.2
Sample B Female 83.2
Sample C Male 112.1
Sample D Male 89.7
Superior colliculi
nTPM: 104.1
Samples: 4

Max nTPM: 118.3
Min nTPM: 78.0
Sample A Female 118.3
Sample B Female 78.0
Sample C Male 117.0
Sample D Male 103.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 282.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 282.9
Samples: 4

Max nTPM: 290.6
Min nTPM: 272.3
Sample A Male 284.3
Sample B Male 284.4
Sample C Female 272.3
Sample D Female 290.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69014818 Antisense, RP_050310_01_G07, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.