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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:131.5 nTPM
HPA:131.5 nTPM
GTEx:133.7 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:127.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 131.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 130.5
1981 Female, age 72, midline 138.7
2565 Male, age 75, midline 136.9
2048 Male, age 55, midline 129.0
2194 Female, age 79, both hemispheres 124.7
2816 Male, age 47, midline 123.1
Cervical spinal cord, dorsal horn
nTPM: 131.5
2173 Female, age 72, unknown 142.8
2296 Male, age 66, both hemispheres 135.1
2069 Male, age 47, both hemispheres 131.3
1877 Male, age 55, unknown 127.2
2721 Male, age 90, both hemispheres 126.8
2297 Male, age 75, both hemispheres 125.7
Cervical spinal cord, ventral horn
nTPM: 131.2
2809 Male, age 90, both hemispheres 140.6
2480 Male, age 75, both hemispheres 137.7
2098 Female, age 72, unknown 137.4
2068 Male, age 55, unknown 126.6
2295 Male, age 66, both hemispheres 125.1
2820 Female, age 79, both hemispheres 119.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 133.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 133.7
Samples: 159

Max nTPM: 212.5
Min nTPM: 66.0
Std nTPM: 26.4
Median nTPM: 130.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 212.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 203.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 200.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 195.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 190.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 190.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 185.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 181.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 175.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 174.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 171.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 169.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 169.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 169.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 169.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 168.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 166.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 166.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 165.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 164.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 164.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 163.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 162.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 162.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 161.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 161.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 161.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 159.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 159.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 158.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 158.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 157.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 157.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 156.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 155.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 155.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 152.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 152.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 151.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 149.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 148.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 148.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 148.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 147.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 147.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 147.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 146.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 146.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 146.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 145.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 145.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 145.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 145.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 142.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 140.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 140.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 139.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 138.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 138.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 137.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 136.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 136.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 136.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 135.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 135.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 135.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 134.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 134.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 134.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 134.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 133.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 131.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 131.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 131.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 130.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 130.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 130.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 130.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 129.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 129.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 128.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 128.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 128.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 127.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 127.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 127.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 127.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 127.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 127.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 126.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 125.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 125.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 124.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 124.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 123.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 122.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 122.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 122.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 122.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 122.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 122.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 121.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 121.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 120.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 120.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 119.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 119.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 119.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 119.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 117.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 117.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 116.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 114.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 113.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 113.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 112.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 111.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 111.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 111.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 111.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 111.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 110.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 109.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 109.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 109.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 109.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 109.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 106.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 106.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 105.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 105.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 102.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 100.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 100.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 99.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 97.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 97.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 97.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 97.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 92.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 91.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 87.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 81.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 66.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 101.2
FF:10181-103D1 60 years, female 122.4
FF:10159-103A6 76 years, female 80.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.0
Samples: 4

Max nTPM: 113.2
Min nTPM: 104.7
Sample A Female 105.1
Sample B Female 104.7
Sample C Male 113.2
Sample D Male 112.9
Ventral spinal cord
nTPM: 127.7
Samples: 4

Max nTPM: 134.2
Min nTPM: 118.6
Sample A Female 118.6
Sample B Female 134.2
Sample C Male 132.7
Sample D Male 125.2

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