MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1456.2 nTPM
HPA:1456.2 nTPM
GTEx:1477.7 nTPM
FANTOM5:367.3 Scaled Tags Per Million
Pig:254.6 nTPM
Mouse:179.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1456.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1422.2
2666 Male, age 74, left hemisphere 1465.7
2586 Male, age 75, left hemisphere 1450.3
1870 Female, age 42, unknown 1443.3
2828 Female, age 72, unknown 1425.1
1833 Male, age 53, unknown 1424.2
1830 Male, age 51, unknown 1415.6
1827 Male, age 72, unknown 1412.7
2411 Female, age 72, unknown 1398.8
2019 Male, age 18, unknown 1393.2
2219 Male, age 76, both hemispheres 1393.1
Dorsal raphe nucleus
nTPM: 1419.3
2750 Male, age 76, both hemispheres 1433.3
2298 Female, age 72, unknown 1430.1
2016 Female, age 72, unknown 1416.1
2047 Male, age 72, unknown 1414.1
1828 Male, age 53, unknown 1403.0
Inferior colliculus
nTPM: 1419.8
2849 Male, age 72, unknown 1447.5
2097 Female, age 72, unknown 1420.6
1890 Male, age 53, unknown 1411.3
1848 Female, age 42, unknown 1400.0
Median raphe nucleus
nTPM: 1441.9
2220 Male, age 76, midline 1441.9
Pedunculopontine tegmental nucleus
nTPM: 1456.2
2338 Male, age 61, both hemispheres 1482.2
2334 Male, age 80, both hemispheres 1470.9
1921 Female, age 85, both hemispheres 1415.5
Periaquaductal grey, anterior
nTPM: 1427.7
2502 Female, age 75, unknown 1442.9
1795 Male, age 51, unknown 1428.2
1947 Male, age 18, unknown 1412.0
Periaquaductal grey, dorsal
nTPM: 1420.3
2850 Male, age 76, both hemispheres 1446.9
1840 Male, age 53, unknown 1440.1
1831 Male, age 72, unknown 1408.5
2464 Female, age 72, unknown 1385.7
Periaquaductal grey, lateral
nTPM: 1415.6
2053 Male, age 18, unknown 1440.4
2140 Male, age 76, both hemispheres 1412.9
2272 Male, age 74, both hemispheres 1393.5
Pretectal area
nTPM: 1414.6
1817 Female, age 42, unknown 1432.6
1815 Male, age 53, unknown 1424.9
2825 Male, age 18, unknown 1424.5
1816 Male, age 51, unknown 1420.6
2224 Female, age 72, unknown 1419.9
1944 Female, age 72, unknown 1417.6
2007 Male, age 72, unknown 1413.0
2316 Male, age 76, right hemisphere 1408.0
2667 Female, age 75, unknown 1407.3
2407 Male, age 75, both hemispheres 1405.0
2273 Male, age 74, both hemispheres 1386.9
Red nucleus
nTPM: 1428.3
2503 Female, age 72, unknown 1477.1
1904 Male, age 53, unknown 1444.6
2725 Female, age 75, unknown 1439.6
2584 Male, age 75, left hemisphere 1438.9
1821 Female, age 72, unknown 1438.8
1865 Male, age 51, unknown 1431.3
2227 Male, age 72, unknown 1421.5
2769 Male, age 72, unknown 1420.7
2785 Male, age 18, unknown 1414.7
1954 Female, age 42, unknown 1409.6
2588 Male, age 74, left hemisphere 1408.3
2823 Male, age 76, right hemisphere 1394.2
Substantia nigra
nTPM: 1445.7
2699 Male, age 18, unknown 1498.9
1851 Male, age 51, unknown 1477.3
1916 Female, age 42, unknown 1473.9
2665 Male, age 74, both hemispheres 1472.7
2409 Female, age 72, unknown 1453.7
2241 Male, age 72, unknown 1438.9
1889 Female, age 72, unknown 1430.9
2590 Female, age 75, unknown 1411.8
2583 Male, age 75, right hemisphere 1401.2
1941 Male, age 53, unknown 1397.6
Superior colliculus
nTPM: 1434.1
2587 Male, age 74, left hemisphere 1459.2
1913 Female, age 42, unknown 1452.6
1995 Male, age 72, unknown 1449.3
1796 Male, age 53, unknown 1447.8
2668 Female, age 75, unknown 1445.8
2664 Male, age 75, both hemispheres 1441.8
1839 Male, age 51, unknown 1414.0
1895 Male, age 76, right hemisphere 1411.5
2261 Male, age 18, unknown 1410.5
2087 Female, age 72, unknown 1408.1
Ventral tegmental area
nTPM: 1445.2
1915 Female, age 42, unknown 1482.5
2223 Female, age 72, unknown 1463.1
2021 Male, age 53, unknown 1451.9
2218 Male, age 76, both hemispheres 1430.1
1942 Male, age 51, unknown 1427.5
2410 Female, age 72, unknown 1416.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1477.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1477.7
Samples: 139

Max nTPM: 5325.9
Min nTPM: 434.9
Std nTPM: 674.8
Median nTPM: 1341.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5325.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4008.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3394.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3381.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3317.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3213.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2900.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2473.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2404.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2388.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2368.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 367.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 367.3
FF:10158-103A5 76 years, female 367.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 254.6
Pig sample Sample description nTPM
Midbrain
nTPM: 239.7
Samples: 4

Max nTPM: 347.1
Min nTPM: 156.5
Sample A Female 347.1
Sample B Female 263.4
Sample C Male 191.6
Sample D Male 156.5
Periaqueductal gray
nTPM: 197.8
Samples: 3

Max nTPM: 213.2
Min nTPM: 180.0
Sample B Female 213.2
Sample C Male 200.1
Sample D Male 180.0
Substantia nigra
nTPM: 254.7
Samples: 4

Max nTPM: 354.5
Min nTPM: 199.6
Sample A Female 354.5
Sample B Female 252.8
Sample C Male 211.7
Sample D Male 199.6
Superior colliculi
nTPM: 232.9
Samples: 4

Max nTPM: 303.9
Min nTPM: 197.8
Sample A Female 303.9
Sample B Female 197.8
Sample C Male 216.0
Sample D Male 214.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 179.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.7
Samples: 4

Max nTPM: 215.5
Min nTPM: 152.2
Sample A Male 215.5
Sample B Male 179.3
Sample C Female 152.2
Sample D Female 171.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
68441496 Antisense, RP_041214_02_E01, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.