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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:47.3 nTPM
HPA:47.3 nTPM
GTEx:76.1 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:98.9 nTPM
Allen mouse:17.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 47.3
Sample id Sample description nTPM
Amygdala
nTPM: 45.5
2517 Female, age 94, left hemisphere 46.3
2814 Male, age 76, right hemisphere 45.6
2514 Male, age 75, right hemisphere 45.5
2695 Female, age 67, right hemisphere 45.2
1987 Female, age 91, left hemisphere 44.7
Basal amygdala
nTPM: 46.2
2110 Male, age 80, left hemisphere 48.7
2243 Female, age 91, right hemisphere 47.3
2685 Female, age 94, left hemisphere 46.5
2609 Male, age 75, right hemisphere 45.7
1955 Male, age 76, both hemispheres 44.6
2827 Female, age 67, right hemisphere 44.5
Central amygdala
nTPM: 45.8
2826 Female, age 94, left hemisphere 48.2
2239 Male, age 80, left hemisphere 47.8
1905 Male, age 76, both hemispheres 45.1
2515 Male, age 75, right hemisphere 44.5
2701 Female, age 91, right hemisphere 43.2
Corticomedial amygdala
nTPM: 47.0
2829 Male, age 80, left hemisphere 51.9
2242 Female, age 91, right hemisphere 48.4
2428 Male, age 75, right hemisphere 46.2
2429 Female, age 94, left hemisphere 45.9
2240 Male, age 76, both hemispheres 44.9
2535 Female, age 67, right hemisphere 44.9
Lateral amygdala
nTPM: 45.0
2534 Female, age 94, left hemisphere 48.1
1883 Male, age 76, both hemispheres 46.5
2516 Male, age 75, right hemisphere 45.4
2830 Female, age 67, right hemisphere 44.2
2255 Female, age 91, right hemisphere 43.3
2256 Male, age 80, left hemisphere 42.4
Stria terminalis, bed nucleus
nTPM: 47.3
1974 Female, age 91, both hemispheres 51.2
2486 Female, age 94, both hemispheres 47.4
2201 Male, age 74, unknown 43.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 76.1
Samples: 152

Max nTPM: 226.9
Min nTPM: 36.4
Std nTPM: 30.2
Median nTPM: 69.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 226.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 201.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 171.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 164.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 157.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 145.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 134.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 131.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 126.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 124.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 123.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 114.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 113.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 111.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 108.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 106.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 104.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 99.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 98.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 97.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 97.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 96.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 96.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 94.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 94.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 90.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 88.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 87.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 86.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 85.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 85.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 84.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 84.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 83.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 83.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 80.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 80.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 80.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 80.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 79.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 79.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 78.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 76.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 76.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 76.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 75.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 73.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 73.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 71.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 71.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 70.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 70.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 70.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 70.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 69.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 69.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 67.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 66.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 66.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 64.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 64.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 63.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 61.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 61.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 61.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 61.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 60.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 60.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 60.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 60.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 60.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 59.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 59.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 59.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 58.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 57.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 56.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 56.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 55.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 55.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 54.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 54.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 54.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 54.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 54.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 53.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 53.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 53.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 52.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 52.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 52.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 52.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 52.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 49.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 49.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 46.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 45.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 45.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 45.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 44.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 44.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 41.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 37.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 36.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.1
FF:10151-102I7 76 years, female 69.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.1
Pig sample Sample description nTPM
Amygdala
nTPM: 12.1
Samples: 4

Max nTPM: 18.0
Min nTPM: 9.4
Sample A Female 18.0
Sample B Female 9.6
Sample C Male 9.4
Sample D Male 11.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 98.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 98.9
Samples: 4

Max nTPM: 112.0
Min nTPM: 93.2
Sample A Male 94.9
Sample B Male 93.2
Sample C Female 112.0
Sample D Female 95.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.5
70543029 Antisense, RP_050329_01_G03, Mouse strain C57BL/6J (56 days, male) 17.5

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