MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.3 nTPM
HPA:47.3 nTPM
GTEx:51.1 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:79.4 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2586 Male, age 75, left hemisphere 47.1
2666 Male, age 74, left hemisphere 46.8
2019 Male, age 18, unknown 45.6
1827 Male, age 72, unknown 44.4
2411 Female, age 72, unknown 44.4
1870 Female, age 42, unknown 44.0
2219 Male, age 76, both hemispheres 43.7
2828 Female, age 72, unknown 42.6
1830 Male, age 51, unknown 42.5
1833 Male, age 53, unknown 42.2
Dorsal raphe nucleus
nTPM: 44.1
2047 Male, age 72, unknown 46.1
1828 Male, age 53, unknown 45.7
2298 Female, age 72, unknown 44.5
2750 Male, age 76, both hemispheres 42.9
2016 Female, age 72, unknown 41.3
Inferior colliculus
nTPM: 43.6
2097 Female, age 72, unknown 44.8
1890 Male, age 53, unknown 43.7
1848 Female, age 42, unknown 43.1
2849 Male, age 72, unknown 42.7
Median raphe nucleus
nTPM: 44.7
2220 Male, age 76, midline 44.7
Pedunculopontine tegmental nucleus
nTPM: 44.4
1921 Female, age 85, both hemispheres 45.0
2334 Male, age 80, both hemispheres 44.8
2338 Male, age 61, both hemispheres 43.6
Periaquaductal grey, anterior
nTPM: 43.7
1795 Male, age 51, unknown 44.0
2502 Female, age 75, unknown 43.8
1947 Male, age 18, unknown 43.2
Periaquaductal grey, dorsal
nTPM: 42.3
1840 Male, age 53, unknown 43.6
1831 Male, age 72, unknown 42.2
2850 Male, age 76, both hemispheres 42.0
2464 Female, age 72, unknown 41.6
Periaquaductal grey, lateral
nTPM: 41.9
2053 Male, age 18, unknown 42.7
2272 Male, age 74, both hemispheres 42.1
2140 Male, age 76, both hemispheres 40.8
Pretectal area
nTPM: 44.9
1816 Male, age 51, unknown 49.5
2007 Male, age 72, unknown 48.1
1817 Female, age 42, unknown 47.6
1944 Female, age 72, unknown 47.6
1815 Male, age 53, unknown 45.1
2407 Male, age 75, both hemispheres 43.7
2667 Female, age 75, unknown 43.4
2224 Female, age 72, unknown 43.3
2825 Male, age 18, unknown 43.0
2273 Male, age 74, both hemispheres 41.8
2316 Male, age 76, right hemisphere 41.2
Red nucleus
nTPM: 43.9
2725 Female, age 75, unknown 46.1
2588 Male, age 74, left hemisphere 46.0
1821 Female, age 72, unknown 45.9
2584 Male, age 75, left hemisphere 45.3
2785 Male, age 18, unknown 44.8
1954 Female, age 42, unknown 44.4
2503 Female, age 72, unknown 43.0
2227 Male, age 72, unknown 42.9
1865 Male, age 51, unknown 42.6
2769 Male, age 72, unknown 42.6
1904 Male, age 53, unknown 41.7
2823 Male, age 76, right hemisphere 41.7
Substantia nigra
nTPM: 47.3
1916 Female, age 42, unknown 51.5
1941 Male, age 53, unknown 50.7
1851 Male, age 51, unknown 48.7
2665 Male, age 74, both hemispheres 47.9
1889 Female, age 72, unknown 47.8
2241 Male, age 72, unknown 47.1
2583 Male, age 75, right hemisphere 46.8
2409 Female, age 72, unknown 45.3
2699 Male, age 18, unknown 44.6
2590 Female, age 75, unknown 42.8
Superior colliculus
nTPM: 43.6
2668 Female, age 75, unknown 46.7
2087 Female, age 72, unknown 45.0
2261 Male, age 18, unknown 44.3
2587 Male, age 74, left hemisphere 43.7
1895 Male, age 76, right hemisphere 43.6
1796 Male, age 53, unknown 43.5
2664 Male, age 75, both hemispheres 42.5
1839 Male, age 51, unknown 42.2
1913 Female, age 42, unknown 42.1
1995 Male, age 72, unknown 41.9
Ventral tegmental area
nTPM: 45.1
1915 Female, age 42, unknown 47.4
2410 Female, age 72, unknown 45.9
2223 Female, age 72, unknown 45.5
2218 Male, age 76, both hemispheres 44.4
1942 Male, age 51, unknown 44.1
2021 Male, age 53, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.1
Samples: 139

Max nTPM: 116.9
Min nTPM: 27.3
Std nTPM: 13.9
Median nTPM: 48.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 116.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 91.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 88.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 84.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 75.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 73.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 71.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 70.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 22.1
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 12.3
Sample C Male 22.1
Sample D Male 13.0
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 13.2
Min nTPM: 9.5
Sample B Female 9.6
Sample C Male 13.2
Sample D Male 9.5
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 8.1
Sample A Female 20.0
Sample B Female 10.7
Sample C Male 15.9
Sample D Male 8.1
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 21.5
Min nTPM: 11.7
Sample A Female 16.2
Sample B Female 11.7
Sample C Male 21.5
Sample D Male 12.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 81.4
Min nTPM: 76.7
Sample A Male 79.8
Sample B Male 79.7
Sample C Female 76.7
Sample D Female 81.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
70543029 Antisense, RP_050329_01_G03, Mouse strain C57BL/6J (56 days, male) 10.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.