MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.2 nTPM
HPA:97.2 nTPM
GTEx:104.6 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:56.8 nTPM
Mouse:100.7 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.1
2411 Female, age 72, unknown 94.8
1827 Male, age 72, unknown 94.6
2586 Male, age 75, left hemisphere 92.5
1870 Female, age 42, unknown 91.8
2019 Male, age 18, unknown 91.3
2219 Male, age 76, both hemispheres 90.7
2828 Female, age 72, unknown 87.7
1833 Male, age 53, unknown 87.4
1830 Male, age 51, unknown 85.3
2666 Male, age 74, left hemisphere 84.8
Dorsal raphe nucleus
nTPM: 94.2
2298 Female, age 72, unknown 102.0
2047 Male, age 72, unknown 99.3
2750 Male, age 76, both hemispheres 92.4
1828 Male, age 53, unknown 91.9
2016 Female, age 72, unknown 85.5
Inferior colliculus
nTPM: 90.8
2097 Female, age 72, unknown 94.6
1890 Male, age 53, unknown 91.2
1848 Female, age 42, unknown 90.0
2849 Male, age 72, unknown 87.7
Median raphe nucleus
nTPM: 94.5
2220 Male, age 76, midline 94.5
Pedunculopontine tegmental nucleus
nTPM: 91.9
1921 Female, age 85, both hemispheres 96.0
2334 Male, age 80, both hemispheres 94.6
2338 Male, age 61, both hemispheres 85.0
Periaquaductal grey, anterior
nTPM: 92.2
1947 Male, age 18, unknown 94.5
1795 Male, age 51, unknown 92.1
2502 Female, age 75, unknown 90.1
Periaquaductal grey, dorsal
nTPM: 88.2
1840 Male, age 53, unknown 91.6
2464 Female, age 72, unknown 88.0
1831 Male, age 72, unknown 86.8
2850 Male, age 76, both hemispheres 86.3
Periaquaductal grey, lateral
nTPM: 86.6
2272 Male, age 74, both hemispheres 89.4
2053 Male, age 18, unknown 86.8
2140 Male, age 76, both hemispheres 83.5
Pretectal area
nTPM: 93.0
1816 Male, age 51, unknown 99.1
2007 Male, age 72, unknown 97.8
1817 Female, age 42, unknown 96.2
2667 Female, age 75, unknown 95.3
1944 Female, age 72, unknown 95.2
2224 Female, age 72, unknown 94.6
1815 Male, age 53, unknown 92.2
2273 Male, age 74, both hemispheres 92.2
2825 Male, age 18, unknown 90.6
2407 Male, age 75, both hemispheres 86.1
2316 Male, age 76, right hemisphere 84.1
Red nucleus
nTPM: 89.4
1821 Female, age 72, unknown 98.2
1904 Male, age 53, unknown 90.7
2584 Male, age 75, left hemisphere 89.4
2785 Male, age 18, unknown 89.2
1865 Male, age 51, unknown 89.0
2725 Female, age 75, unknown 88.7
2769 Male, age 72, unknown 88.7
2503 Female, age 72, unknown 88.5
2227 Male, age 72, unknown 88.4
2588 Male, age 74, left hemisphere 88.4
1954 Female, age 42, unknown 88.2
2823 Male, age 76, right hemisphere 85.9
Substantia nigra
nTPM: 97.2
1851 Male, age 51, unknown 104.7
1916 Female, age 42, unknown 103.7
1941 Male, age 53, unknown 99.2
1889 Female, age 72, unknown 98.4
2409 Female, age 72, unknown 98.3
2665 Male, age 74, both hemispheres 95.9
2241 Male, age 72, unknown 95.6
2699 Male, age 18, unknown 93.0
2590 Female, age 75, unknown 92.2
2583 Male, age 75, right hemisphere 91.6
Superior colliculus
nTPM: 90.4
2668 Female, age 75, unknown 95.1
1796 Male, age 53, unknown 93.1
1895 Male, age 76, right hemisphere 92.7
2261 Male, age 18, unknown 92.0
2587 Male, age 74, left hemisphere 91.8
2087 Female, age 72, unknown 90.8
2664 Male, age 75, both hemispheres 88.5
1839 Male, age 51, unknown 87.7
1913 Female, age 42, unknown 87.4
1995 Male, age 72, unknown 84.8
Ventral tegmental area
nTPM: 95.2
2410 Female, age 72, unknown 103.5
1915 Female, age 42, unknown 99.4
2218 Male, age 76, both hemispheres 95.1
2223 Female, age 72, unknown 92.4
1942 Male, age 51, unknown 91.5
2021 Male, age 53, unknown 89.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.6
Samples: 139

Max nTPM: 204.5
Min nTPM: 55.7
Std nTPM: 28.8
Median nTPM: 99.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 204.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 188.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 180.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 179.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 172.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 169.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 163.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 162.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 160.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 152.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.5
FF:10158-103A5 76 years, female 51.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.8
Pig sample Sample description nTPM
Midbrain
nTPM: 55.4
Samples: 4

Max nTPM: 61.4
Min nTPM: 48.4
Sample A Female 56.6
Sample B Female 48.4
Sample C Male 61.4
Sample D Male 55.2
Periaqueductal gray
nTPM: 41.9
Samples: 3

Max nTPM: 49.4
Min nTPM: 36.9
Sample B Female 39.5
Sample C Male 49.4
Sample D Male 36.9
Substantia nigra
nTPM: 50.8
Samples: 4

Max nTPM: 73.4
Min nTPM: 37.0
Sample A Female 73.4
Sample B Female 37.0
Sample C Male 54.8
Sample D Male 37.8
Superior colliculi
nTPM: 56.8
Samples: 4

Max nTPM: 69.2
Min nTPM: 38.9
Sample A Female 69.2
Sample B Female 38.9
Sample C Male 63.4
Sample D Male 55.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 100.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.7
Samples: 4

Max nTPM: 111.4
Min nTPM: 94.3
Sample A Male 111.4
Sample B Male 99.6
Sample C Female 94.3
Sample D Female 97.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69174493 Antisense, RP_050329_02_D09, Mouse strain C57BL/6J (56 days, male) 8.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.