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RPS6
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1230.0 nTPM
HPA:1230.0 nTPM
GTEx:1552.9 nTPM
FANTOM5:151.2 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:676.4 nTPM
Allen mouse:10.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1230.0
Sample id Sample description nTPM
Amygdala
nTPM: 1218.4
2695 Female, age 67, right hemisphere 1320.7
2514 Male, age 75, right hemisphere 1203.6
2814 Male, age 76, right hemisphere 1196.3
2517 Female, age 94, left hemisphere 1191.5
1987 Female, age 91, left hemisphere 1180.0
Basal amygdala
nTPM: 1191.1
2827 Female, age 67, right hemisphere 1329.6
2609 Male, age 75, right hemisphere 1204.0
2685 Female, age 94, left hemisphere 1185.6
2110 Male, age 80, left hemisphere 1175.8
1955 Male, age 76, both hemispheres 1133.5
2243 Female, age 91, right hemisphere 1117.8
Central amygdala
nTPM: 1214.0
2826 Female, age 94, left hemisphere 1423.3
2515 Male, age 75, right hemisphere 1193.8
2701 Female, age 91, right hemisphere 1155.4
2239 Male, age 80, left hemisphere 1149.9
1905 Male, age 76, both hemispheres 1147.4
Corticomedial amygdala
nTPM: 1155.8
2535 Female, age 67, right hemisphere 1192.6
2428 Male, age 75, right hemisphere 1185.8
2829 Male, age 80, left hemisphere 1162.5
2429 Female, age 94, left hemisphere 1140.0
2240 Male, age 76, both hemispheres 1133.1
2242 Female, age 91, right hemisphere 1120.5
Lateral amygdala
nTPM: 1230.0
2830 Female, age 67, right hemisphere 1412.5
2516 Male, age 75, right hemisphere 1269.3
2534 Female, age 94, left hemisphere 1226.4
2256 Male, age 80, left hemisphere 1192.3
1883 Male, age 76, both hemispheres 1149.0
2255 Female, age 91, right hemisphere 1130.6
Stria terminalis, bed nucleus
nTPM: 1112.3
1974 Female, age 91, both hemispheres 1141.0
2201 Male, age 74, unknown 1119.5
2486 Female, age 94, both hemispheres 1076.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1552.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1552.9
Samples: 152

Max nTPM: 4682.9
Min nTPM: 676.9
Std nTPM: 634.4
Median nTPM: 1387.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4682.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4008.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3416.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3347.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3330.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2891.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2858.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2800.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2692.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2673.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2564.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2556.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2487.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2454.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2339.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2300.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2297.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2281.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2276.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2203.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2177.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2167.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2133.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2081.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2070.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2037.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2031.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2018.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1979.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1904.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1878.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1873.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1867.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1863.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1860.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1804.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1781.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1771.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1762.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1757.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1753.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1734.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1734.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1731.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1710.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1702.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1695.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1678.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1671.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1664.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1661.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1644.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1633.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1629.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1616.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1614.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1576.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1573.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1561.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1541.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1520.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1516.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1500.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1493.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1484.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1466.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1463.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1453.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1445.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1430.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1421.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1420.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1405.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1405.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1392.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1388.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1386.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1372.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1362.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1357.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1333.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1330.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1308.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1299.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1299.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1298.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1292.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1288.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1284.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1273.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1267.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1264.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1263.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1259.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1258.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1258.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1255.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1255.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1250.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1247.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1247.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1246.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1243.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1212.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1197.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1191.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1186.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1181.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1175.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1173.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1158.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1134.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1128.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1127.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1116.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1114.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1111.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1099.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1097.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1089.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1087.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1081.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1064.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1059.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1049.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1049.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1026.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1024.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1021.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 997.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 996.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 992.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 985.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 983.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 983.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 978.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 967.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 950.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 934.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 927.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 919.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 912.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 905.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 884.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 877.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 875.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 873.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 819.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 764.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 753.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 694.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 676.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 151.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.2
FF:10151-102I7 76 years, female 151.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.8
Pig sample Sample description nTPM
Amygdala
nTPM: 38.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 27.7
Sample A Female 44.4
Sample B Female 45.6
Sample C Male 37.7
Sample D Male 27.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 676.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 676.4
Samples: 4

Max nTPM: 692.6
Min nTPM: 659.3
Sample A Male 672.2
Sample B Male 681.6
Sample C Female 692.6
Sample D Female 659.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.1
69873301 Antisense, RP_050512_01_A01, Mouse strain C57BL/6J (56 days, male) 10.1

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