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RPS6
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:716.4 nTPM
GTEx:716.4 nTPM
FANTOM5:177.5 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:1338.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 716.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 716.4
Samples: 105

Max nTPM: 918.7
Min nTPM: 506.5
Std nTPM: 97.2
Median nTPM:
379_1 60 years, male 918.7
17_1 71 years, male 905.5
389_1 86 years, female 899.8
126_1 63 years, male 896.7
35_1 74 years, female 888.0
495_1 57 years, female 877.5
120_1 70 years, female 875.5
321_1 62 years, female 872.1
246_1 77 years, male 871.8
4_1 88 years, female 863.6
347_1 72 years, male 863.3
384_1 83 years, male 850.7
396_1 62 years, male 848.8
307_1 66 years, female 844.1
2_1 77 years, female 832.3
308_1 70 years, female 822.4
189_1 76 years, male 820.9
447_1 81 years, male 817.8
322_1 76 years, male 816.6
254_1 77 years, female 815.6
153_1 70 years, female 810.1
376_1 75 years, female 804.3
315_1 62 years, female 803.5
375_1 74 years, female 801.1
139_1 64 years, female 795.4
237_1 82 years, male 792.8
386_1 76 years, male 786.7
452_1 88 years, female 783.1
526_1 61 years, male 779.5
415_1 77 years, female 778.2
265_1 87 years, male 775.2
137_1 83 years, male 775.0
405_1 91 years, male 770.6
119_1 70 years, female 770.2
145_1 84 years, male 770.1
320_1 89 years, female 766.7
266_1 85 years, male 766.4
414_1 84 years, female 755.2
377_1 82 years, female 754.3
6_1 73 years, female 751.3
499_1 55 years, female 744.8
518_1 75 years, female 741.3
162_1 79 years, female 741.0
117_1 61 years, male 738.7
41_1 94 years, female 731.8
229_1 69 years, female 730.4
18_1 88 years, male 724.3
142_1 61 years, female 719.7
404_1 82 years, female 719.4
218_1 71 years, female 719.1
109_1 81 years, female 716.4
319_1 81 years, male 716.2
355_1 70 years, female 710.7
468_1 89 years, male 707.1
394_1 75 years, female 705.7
243_1 75 years, male 700.2
316_1 62 years, male 699.7
317_1 60 years, male 698.3
311_1 78 years, male 693.8
99_1 64 years, male 688.7
348_1 84 years, male 687.6
177_1 74 years, male 680.6
466_1 57 years, female 679.5
217_1 76 years, male 678.1
501_1 88 years, male 678.1
173_1 67 years, male 676.6
42_1 85 years, male 675.2
251_1 78 years, male 673.0
115_1 83 years, male 672.3
349_1 83 years, male 668.0
335_1 73 years, female 665.9
351_1 91 years, male 664.5
491_1 89 years, female 659.4
32_1 67 years, male 651.8
354_1 81 years, female 651.4
81_1 67 years, male 649.9
324_1 76 years, male 649.0
314_1 67 years, male 644.2
313_1 79 years, female 636.9
406_1 79 years, male 634.9
352_1 62 years, male 632.2
172_1 72 years, female 628.4
503_1 68 years, male 626.9
288_1 66 years, female 624.4
425_1 59 years, female 623.9
295_1 61 years, female 615.7
291_1 76 years, male 611.3
264_1 73 years, female 609.9
353_1 82 years, female 608.5
89_1 63 years, male 608.4
318_1 68 years, male 603.6
163_1 78 years, male 602.2
286_1 68 years, female 601.7
350_1 84 years, female 599.9
517_1 88 years, male 594.5
480_1 63 years, male 587.1
293_1 68 years, female 586.2
413_1 59 years, female 578.3
149_1 88 years, male 573.1
9_1 66 years, female 572.8
292_1 71 years, male 568.5
490_1 67 years, female 568.4
506_1 65 years, male 536.1
356_1 87 years, female 534.6
43_1 64 years, female 506.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 177.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 177.5
FF:10030-101E3 24-65 years, mixed 177.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.1
Pig sample Sample description nTPM
Retina
nTPM: 24.1
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.5
Sample A Female 23.5
Sample B Female 24.1
Sample C Male 26.2
Sample D Male 22.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1338.7
Mouse sample Sample description nTPM
Retina
nTPM: 1338.7
Samples: 4

Max nTPM: 1494.8
Min nTPM: 1157.1
Sample A Male 1343.1
Sample B Male 1157.1
Sample C Female 1494.8
Sample D Female 1359.8

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by the Knut & Alice Wallenberg Foundation.