MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1255.9 nTPM
HPA:1255.9 nTPM
GTEx:1684.3 nTPM
FANTOM5:228.1 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:871.3 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1255.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1221.0
2666 Male, age 74, left hemisphere 1296.2
1830 Male, age 51, unknown 1244.4
1833 Male, age 53, unknown 1238.1
1870 Female, age 42, unknown 1233.4
2828 Female, age 72, unknown 1226.1
2586 Male, age 75, left hemisphere 1224.9
2411 Female, age 72, unknown 1217.5
1827 Male, age 72, unknown 1198.5
2019 Male, age 18, unknown 1179.4
2219 Male, age 76, both hemispheres 1152.0
Dorsal raphe nucleus
nTPM: 1194.5
2016 Female, age 72, unknown 1241.5
2750 Male, age 76, both hemispheres 1205.8
1828 Male, age 53, unknown 1191.7
2298 Female, age 72, unknown 1168.3
2047 Male, age 72, unknown 1165.3
Inferior colliculus
nTPM: 1189.5
2849 Male, age 72, unknown 1216.3
1848 Female, age 42, unknown 1193.5
1890 Male, age 53, unknown 1192.9
2097 Female, age 72, unknown 1155.3
Median raphe nucleus
nTPM: 1176.5
2220 Male, age 76, midline 1176.5
Pedunculopontine tegmental nucleus
nTPM: 1214.7
2338 Male, age 61, both hemispheres 1252.5
2334 Male, age 80, both hemispheres 1240.7
1921 Female, age 85, both hemispheres 1151.0
Periaquaductal grey, anterior
nTPM: 1173.3
2502 Female, age 75, unknown 1192.8
1947 Male, age 18, unknown 1173.2
1795 Male, age 51, unknown 1153.8
Periaquaductal grey, dorsal
nTPM: 1198.1
1831 Male, age 72, unknown 1221.8
2850 Male, age 76, both hemispheres 1199.3
1840 Male, age 53, unknown 1196.7
2464 Female, age 72, unknown 1174.7
Periaquaductal grey, lateral
nTPM: 1186.4
2053 Male, age 18, unknown 1224.6
2140 Male, age 76, both hemispheres 1170.3
2272 Male, age 74, both hemispheres 1164.2
Pretectal area
nTPM: 1171.9
2825 Male, age 18, unknown 1209.5
1815 Male, age 53, unknown 1207.2
2316 Male, age 76, right hemisphere 1194.4
2407 Male, age 75, both hemispheres 1190.8
1817 Female, age 42, unknown 1182.2
2224 Female, age 72, unknown 1170.0
2007 Male, age 72, unknown 1157.3
1944 Female, age 72, unknown 1151.5
2273 Male, age 74, both hemispheres 1146.7
2667 Female, age 75, unknown 1142.6
1816 Male, age 51, unknown 1138.9
Red nucleus
nTPM: 1255.9
2503 Female, age 72, unknown 1319.2
2588 Male, age 74, left hemisphere 1285.0
1865 Male, age 51, unknown 1283.4
1821 Female, age 72, unknown 1268.9
2725 Female, age 75, unknown 1267.7
2584 Male, age 75, left hemisphere 1262.6
1904 Male, age 53, unknown 1261.4
2769 Male, age 72, unknown 1235.3
1954 Female, age 42, unknown 1234.0
2227 Male, age 72, unknown 1230.3
2823 Male, age 76, right hemisphere 1223.7
2785 Male, age 18, unknown 1199.9
Substantia nigra
nTPM: 1228.9
2699 Male, age 18, unknown 1315.6
2665 Male, age 74, both hemispheres 1280.6
1851 Male, age 51, unknown 1256.1
2590 Female, age 75, unknown 1221.8
2409 Female, age 72, unknown 1220.8
2241 Male, age 72, unknown 1220.5
1916 Female, age 42, unknown 1206.0
2583 Male, age 75, right hemisphere 1192.5
1889 Female, age 72, unknown 1191.9
1941 Male, age 53, unknown 1183.3
Superior colliculus
nTPM: 1210.9
2587 Male, age 74, left hemisphere 1297.2
1995 Male, age 72, unknown 1271.3
1913 Female, age 42, unknown 1250.1
1839 Male, age 51, unknown 1221.5
2668 Female, age 75, unknown 1212.5
2664 Male, age 75, both hemispheres 1194.8
1895 Male, age 76, right hemisphere 1192.2
1796 Male, age 53, unknown 1171.3
2261 Male, age 18, unknown 1150.3
2087 Female, age 72, unknown 1147.8
Ventral tegmental area
nTPM: 1216.3
2223 Female, age 72, unknown 1241.0
2021 Male, age 53, unknown 1232.3
1915 Female, age 42, unknown 1228.3
2410 Female, age 72, unknown 1216.8
1942 Male, age 51, unknown 1190.2
2218 Male, age 76, both hemispheres 1189.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1684.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1684.3
Samples: 139

Max nTPM: 5111.4
Min nTPM: 578.7
Std nTPM: 692.2
Median nTPM: 1546.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5111.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4884.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3766.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3440.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2999.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2840.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2806.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2792.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2771.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2680.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2625.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 228.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 228.1
FF:10158-103A5 76 years, female 228.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.6
Pig sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 75.2
Min nTPM: 43.8
Sample A Female 75.2
Sample B Female 56.6
Sample C Male 44.7
Sample D Male 43.8
Periaqueductal gray
nTPM: 46.8
Samples: 3

Max nTPM: 48.3
Min nTPM: 44.6
Sample B Female 48.3
Sample C Male 47.6
Sample D Male 44.6
Substantia nigra
nTPM: 58.3
Samples: 4

Max nTPM: 68.8
Min nTPM: 50.6
Sample A Female 68.8
Sample B Female 63.2
Sample C Male 50.7
Sample D Male 50.6
Superior colliculi
nTPM: 61.6
Samples: 4

Max nTPM: 77.8
Min nTPM: 50.6
Sample A Female 66.6
Sample B Female 77.8
Sample C Male 51.3
Sample D Male 50.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 871.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 871.3
Samples: 4

Max nTPM: 934.9
Min nTPM: 814.2
Sample A Male 934.9
Sample B Male 866.4
Sample C Female 814.2
Sample D Female 869.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
69873301 Antisense, RP_050512_01_A01, Mouse strain C57BL/6J (56 days, male) 11.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.