BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.6 nTPM
HPA:60.6 nTPM
GTEx:70.0 nTPM
FANTOM5:98.2 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.7
2481 Female, age 94, left hemisphere 62.6
2846 Female, age 79, unknown 61.8
1854 Male, age 80, left hemisphere 61.0
1857 Female, age 85, left hemisphere 59.7
2288 Male, age 75, left hemisphere 59.3
2290 Female, age 72, unknown 58.2
1781 Male, age 74, unknown 57.5
2289 Male, age 61, right hemisphere 57.5
Claustrum
nTPM: 56.4
1956 Male, age 74, unknown 58.0
2392 Female, age 94, both hemispheres 58.0
2568 Male, age 61, both hemispheres 57.0
2491 Male, age 75, both hemispheres 56.7
2198 Male, age 80, both hemispheres 56.4
2284 Female, age 91, both hemispheres 56.1
2645 Female, age 72, unknown 56.1
2196 Female, age 79, unknown 55.8
2292 Female, age 85, both hemispheres 53.6
Globus pallidus, externus
nTPM: 60.6
2772 Female, age 79, unknown 65.5
1996 Male, age 80, right hemisphere 63.3
2395 Male, age 75, both hemispheres 61.3
2646 Male, age 61, right hemisphere 58.0
2567 Female, age 72, unknown 54.8
Globus pallidus, internus
nTPM: 60.2
2483 Female, age 94, right hemisphere 62.1
1818 Male, age 74, unknown 62.0
2778 Female, age 91, both hemispheres 61.8
2037 Male, age 80, right hemisphere 61.7
2287 Male, age 75, right hemisphere 60.9
2111 Female, age 85, right hemisphere 57.0
2566 Female, age 72, unknown 55.7
Nucleus accumbens
nTPM: 59.8
2286 Male, age 75, left hemisphere 62.5
2824 Male, age 61, right hemisphere 61.6
1806 Female, age 85, left hemisphere 60.6
1783 Male, age 74, unknown 59.6
1856 Female, age 91, right hemisphere 59.6
2391 Female, age 94, left hemisphere 59.0
2698 Female, age 72, unknown 58.2
2732 Male, age 80, right hemisphere 57.7
Nucleus basalis of Meynert
nTPM: 58.3
2393 Male, age 80, right hemisphere 60.7
2569 Male, age 61, both hemispheres 59.2
2821 Male, age 75, both hemispheres 56.8
2484 Female, age 94, left hemisphere 56.7
Nucleus of the diagonal band
nTPM: 58.4
1812 Female, age 91, both hemispheres 59.6
2029 Male, age 61, right hemisphere 59.4
2775 Male, age 80, right hemisphere 59.1
2195 Female, age 85, both hemispheres 57.4
1979 Male, age 74, unknown 56.6
Olfactory tubercle
nTPM: 57.8
1846 Male, age 80, right hemisphere 58.2
1998 Female, age 91, both hemispheres 58.1
2487 Female, age 94, left hemisphere 57.7
2856 Male, age 75, right hemisphere 57.2
Putamen
nTPM: 59.4
2466 Female, age 79, unknown 63.1
2482 Female, age 94, left hemisphere 61.6
1838 Male, age 80, right hemisphere 61.0
1937 Female, age 91, right hemisphere 59.4
1829 Male, age 74, unknown 59.2
2489 Female, age 72, unknown 55.9
2647 Male, age 75, left hemisphere 55.9
Septal nuclei
nTPM: 57.6
2009 Female, age 91, both hemispheres 59.5
1960 Male, age 74, unknown 59.1
2031 Female, age 72, unknown 58.0
2629 Female, age 94, right hemisphere 57.4
2199 Male, age 80, right hemisphere 56.8
2059 Female, age 85, both hemispheres 56.5
2394 Male, age 61, left hemisphere 55.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 70.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.6
Samples: 246

Max nTPM: 166.2
Min nTPM: 37.7
Std nTPM: 17.7
Median nTPM: 63.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 166.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 165.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 136.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 133.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 128.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 118.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 116.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 108.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 108.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 100.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.6
Samples: 246

Max nTPM: 191.9
Min nTPM: 35.2
Std nTPM: 16.1
Median nTPM: 62.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 191.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 139.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 122.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 119.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 116.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 98.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 93.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 93.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 90.1
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 89.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 89.0
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Brain - Putamen (basal ganglia)
Average nTPM: 70.0
Samples: 205

Max nTPM: 160.7
Min nTPM: 36.0
Std nTPM: 16.2
Median nTPM: 68.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 160.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 127.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 115.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 112.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 108.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 103.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 101.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 100.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 100.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 99.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 98.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 74.8
FF:10164-103B2 76 years, female 74.8
Globus pallidus
Scaled Tags Per Million: 62.8
FF:10175-103C4 60 years, female 71.0
FF:10161-103A8 76 years, female 54.7
Nucleus accumbens
Scaled Tags Per Million: 98.2
FF:10037-101F1 23-56 years, mixed 98.2
Putamen
Scaled Tags Per Million: 90.5
FF:10176-103C5 60 years, female 90.5

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The Human Protein Atlas

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