MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.3 nTPM
HPA:59.3 nTPM
GTEx:64.1 nTPM
FANTOM5:62.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2019 Male, age 18, unknown 62.5
1870 Female, age 42, unknown 59.1
2411 Female, age 72, unknown 59.1
2666 Male, age 74, left hemisphere 58.2
1827 Male, age 72, unknown 57.4
2828 Female, age 72, unknown 57.2
1833 Male, age 53, unknown 56.4
1830 Male, age 51, unknown 56.3
2586 Male, age 75, left hemisphere 56.1
2219 Male, age 76, both hemispheres 55.5
Dorsal raphe nucleus
nTPM: 59.3
2298 Female, age 72, unknown 61.9
1828 Male, age 53, unknown 61.3
2047 Male, age 72, unknown 58.7
2016 Female, age 72, unknown 57.7
2750 Male, age 76, both hemispheres 57.1
Inferior colliculus
nTPM: 58.8
2097 Female, age 72, unknown 61.4
1890 Male, age 53, unknown 59.6
1848 Female, age 42, unknown 58.8
2849 Male, age 72, unknown 55.5
Median raphe nucleus
nTPM: 56.0
2220 Male, age 76, midline 56.0
Pedunculopontine tegmental nucleus
nTPM: 58.5
1921 Female, age 85, both hemispheres 59.5
2334 Male, age 80, both hemispheres 58.1
2338 Male, age 61, both hemispheres 58.0
Periaquaductal grey, anterior
nTPM: 56.8
1795 Male, age 51, unknown 57.3
1947 Male, age 18, unknown 57.2
2502 Female, age 75, unknown 55.9
Periaquaductal grey, dorsal
nTPM: 57.0
2850 Male, age 76, both hemispheres 59.5
2464 Female, age 72, unknown 56.9
1840 Male, age 53, unknown 56.2
1831 Male, age 72, unknown 55.6
Periaquaductal grey, lateral
nTPM: 57.2
2272 Male, age 74, both hemispheres 57.9
2140 Male, age 76, both hemispheres 57.2
2053 Male, age 18, unknown 56.4
Pretectal area
nTPM: 58.5
2007 Male, age 72, unknown 61.3
1817 Female, age 42, unknown 60.5
2667 Female, age 75, unknown 60.1
1944 Female, age 72, unknown 59.4
1816 Male, age 51, unknown 59.1
2273 Male, age 74, both hemispheres 59.1
1815 Male, age 53, unknown 58.8
2224 Female, age 72, unknown 58.2
2316 Male, age 76, right hemisphere 56.9
2825 Male, age 18, unknown 56.1
2407 Male, age 75, both hemispheres 54.3
Red nucleus
nTPM: 58.7
1821 Female, age 72, unknown 61.5
2823 Male, age 76, right hemisphere 61.2
2785 Male, age 18, unknown 60.0
1954 Female, age 42, unknown 59.8
1865 Male, age 51, unknown 59.4
2227 Male, age 72, unknown 59.4
2769 Male, age 72, unknown 58.4
1904 Male, age 53, unknown 58.2
2503 Female, age 72, unknown 57.6
2725 Female, age 75, unknown 57.3
2584 Male, age 75, left hemisphere 56.3
2588 Male, age 74, left hemisphere 55.5
Substantia nigra
nTPM: 57.0
1889 Female, age 72, unknown 59.4
2241 Male, age 72, unknown 59.1
1941 Male, age 53, unknown 58.5
2590 Female, age 75, unknown 58.3
1851 Male, age 51, unknown 57.3
2583 Male, age 75, right hemisphere 56.7
1916 Female, age 42, unknown 56.0
2665 Male, age 74, both hemispheres 55.4
2409 Female, age 72, unknown 54.7
2699 Male, age 18, unknown 54.7
Superior colliculus
nTPM: 57.7
1895 Male, age 76, right hemisphere 60.9
2587 Male, age 74, left hemisphere 58.5
1839 Male, age 51, unknown 58.1
1995 Male, age 72, unknown 58.0
1913 Female, age 42, unknown 57.9
2261 Male, age 18, unknown 57.4
1796 Male, age 53, unknown 57.2
2087 Female, age 72, unknown 57.1
2668 Female, age 75, unknown 57.0
2664 Male, age 75, both hemispheres 55.0
Ventral tegmental area
nTPM: 57.0
2410 Female, age 72, unknown 59.1
1915 Female, age 42, unknown 57.7
2218 Male, age 76, both hemispheres 57.0
2223 Female, age 72, unknown 56.7
1942 Male, age 51, unknown 55.8
2021 Male, age 53, unknown 55.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.1
Samples: 139

Max nTPM: 126.5
Min nTPM: 32.9
Std nTPM: 14.2
Median nTPM: 61.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 126.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 112.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 100.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 97.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 93.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 92.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 91.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 87.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.8
FF:10158-103A5 76 years, female 62.8

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The Human Protein Atlas

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