MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:212.2 nTPM
HPA:212.2 nTPM
GTEx:396.9 nTPM
FANTOM5:43.8 Scaled Tags Per Million
Mouse:557.2 nTPM
Allen mouse:25.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 212.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.6
2219 Male, age 76, both hemispheres 198.3
1827 Male, age 72, unknown 153.8
2411 Female, age 72, unknown 152.6
2828 Female, age 72, unknown 142.8
1870 Female, age 42, unknown 110.8
2586 Male, age 75, left hemisphere 105.7
2019 Male, age 18, unknown 97.8
1833 Male, age 53, unknown 76.9
2666 Male, age 74, left hemisphere 74.9
1830 Male, age 51, unknown 72.2
Dorsal raphe nucleus
nTPM: 158.9
2298 Female, age 72, unknown 245.6
2750 Male, age 76, both hemispheres 177.5
2047 Male, age 72, unknown 172.0
1828 Male, age 53, unknown 122.1
2016 Female, age 72, unknown 77.3
Inferior colliculus
nTPM: 87.4
2097 Female, age 72, unknown 117.1
1848 Female, age 42, unknown 82.8
2849 Male, age 72, unknown 77.8
1890 Male, age 53, unknown 71.9
Median raphe nucleus
nTPM: 212.2
2220 Male, age 76, midline 212.2
Pedunculopontine tegmental nucleus
nTPM: 160.2
2334 Male, age 80, both hemispheres 180.8
1921 Female, age 85, both hemispheres 167.7
2338 Male, age 61, both hemispheres 132.2
Periaquaductal grey, anterior
nTPM: 154.3
1795 Male, age 51, unknown 195.3
1947 Male, age 18, unknown 150.4
2502 Female, age 75, unknown 117.2
Periaquaductal grey, dorsal
nTPM: 93.8
1840 Male, age 53, unknown 106.5
2850 Male, age 76, both hemispheres 93.9
2464 Female, age 72, unknown 90.2
1831 Male, age 72, unknown 84.7
Periaquaductal grey, lateral
nTPM: 106.6
2272 Male, age 74, both hemispheres 136.1
2140 Male, age 76, both hemispheres 92.7
2053 Male, age 18, unknown 91.1
Pretectal area
nTPM: 137.6
2224 Female, age 72, unknown 173.7
1816 Male, age 51, unknown 171.5
1944 Female, age 72, unknown 169.5
2007 Male, age 72, unknown 164.1
2667 Female, age 75, unknown 163.6
2273 Male, age 74, both hemispheres 139.4
1817 Female, age 42, unknown 135.3
1815 Male, age 53, unknown 126.2
2825 Male, age 18, unknown 109.5
2407 Male, age 75, both hemispheres 83.2
2316 Male, age 76, right hemisphere 77.8
Red nucleus
nTPM: 79.3
2785 Male, age 18, unknown 103.1
1954 Female, age 42, unknown 98.7
1821 Female, age 72, unknown 89.9
2227 Male, age 72, unknown 84.1
2769 Male, age 72, unknown 83.2
1904 Male, age 53, unknown 81.3
2725 Female, age 75, unknown 77.0
2503 Female, age 72, unknown 74.5
1865 Male, age 51, unknown 74.1
2584 Male, age 75, left hemisphere 65.6
2588 Male, age 74, left hemisphere 65.3
2823 Male, age 76, right hemisphere 54.9
Substantia nigra
nTPM: 191.8
1916 Female, age 42, unknown 382.3
1941 Male, age 53, unknown 261.5
1851 Male, age 51, unknown 234.6
2409 Female, age 72, unknown 188.4
2665 Male, age 74, both hemispheres 173.5
1889 Female, age 72, unknown 156.7
2241 Male, age 72, unknown 156.6
2699 Male, age 18, unknown 145.6
2590 Female, age 75, unknown 139.4
2583 Male, age 75, right hemisphere 79.9
Superior colliculus
nTPM: 105.3
1796 Male, age 53, unknown 166.6
2087 Female, age 72, unknown 150.4
2261 Male, age 18, unknown 148.3
2668 Female, age 75, unknown 134.8
1839 Male, age 51, unknown 87.7
1895 Male, age 76, right hemisphere 83.9
2587 Male, age 74, left hemisphere 75.6
1913 Female, age 42, unknown 75.4
2664 Male, age 75, both hemispheres 69.8
1995 Male, age 72, unknown 60.4
Ventral tegmental area
nTPM: 179.2
2410 Female, age 72, unknown 244.6
1915 Female, age 42, unknown 218.6
2218 Male, age 76, both hemispheres 210.7
1942 Male, age 51, unknown 144.2
2021 Male, age 53, unknown 130.7
2223 Female, age 72, unknown 126.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 396.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 396.9
Samples: 139

Max nTPM: 1701.6
Min nTPM: 45.0
Std nTPM: 317.2
Median nTPM: 300.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1701.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1501.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1496.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1383.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1095.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1036.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1007.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 950.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 942.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 916.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 915.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.8
FF:10158-103A5 76 years, female 43.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 557.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 557.2
Samples: 4

Max nTPM: 597.9
Min nTPM: 501.9
Sample A Male 597.9
Sample B Male 534.1
Sample C Female 501.9
Sample D Female 594.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.0
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 26.8
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 25.4
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 22.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.