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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:94.1 nTPM
HPA:94.1 nTPM
GTEx:93.0 nTPM
FANTOM5:85.6 Scaled Tags Per Million
Pig:76.8 nTPM
Mouse:185.4 nTPM
Allen mouse:12.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 94.1
Sample id Sample description nTPM
Amygdala
nTPM: 94.1
2514 Male, age 75, right hemisphere 98.9
1987 Female, age 91, left hemisphere 96.4
2814 Male, age 76, right hemisphere 96.3
2695 Female, age 67, right hemisphere 94.7
2517 Female, age 94, left hemisphere 84.3
Basal amygdala
nTPM: 84.2
1955 Male, age 76, both hemispheres 88.2
2243 Female, age 91, right hemisphere 87.8
2609 Male, age 75, right hemisphere 87.6
2110 Male, age 80, left hemisphere 86.4
2685 Female, age 94, left hemisphere 79.5
2827 Female, age 67, right hemisphere 75.7
Central amygdala
nTPM: 87.3
1905 Male, age 76, both hemispheres 92.8
2515 Male, age 75, right hemisphere 92.8
2826 Female, age 94, left hemisphere 86.7
2239 Male, age 80, left hemisphere 82.3
2701 Female, age 91, right hemisphere 81.9
Corticomedial amygdala
nTPM: 88.3
2428 Male, age 75, right hemisphere 96.9
2829 Male, age 80, left hemisphere 92.2
2240 Male, age 76, both hemispheres 89.8
2242 Female, age 91, right hemisphere 89.7
2429 Female, age 94, left hemisphere 86.5
2535 Female, age 67, right hemisphere 74.5
Lateral amygdala
nTPM: 85.0
1883 Male, age 76, both hemispheres 95.6
2516 Male, age 75, right hemisphere 89.2
2534 Female, age 94, left hemisphere 84.5
2255 Female, age 91, right hemisphere 80.4
2256 Male, age 80, left hemisphere 80.4
2830 Female, age 67, right hemisphere 79.5
Stria terminalis, bed nucleus
nTPM: 85.7
1974 Female, age 91, both hemispheres 92.0
2486 Female, age 94, both hemispheres 87.6
2201 Male, age 74, unknown 77.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 93.0
Samples: 152

Max nTPM: 182.6
Min nTPM: 52.1
Std nTPM: 18.4
Median nTPM: 89.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 182.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 152.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 141.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 126.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 125.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 125.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 123.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 123.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 122.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 121.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 120.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 120.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 119.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 119.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 118.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 115.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 114.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 114.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 113.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 113.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 113.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 112.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 112.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 111.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 110.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 110.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 109.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 105.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 105.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 104.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 104.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 103.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 102.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 101.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 101.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 101.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 100.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 98.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 98.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 98.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 98.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 98.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 96.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 96.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 95.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 94.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 94.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 94.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 91.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 91.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 91.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 91.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 91.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 91.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 90.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 90.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 90.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 89.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 89.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 89.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 89.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 88.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 88.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 88.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 87.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 87.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 86.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 85.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 85.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 85.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 85.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 85.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 85.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 84.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 84.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 83.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 82.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 82.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 82.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 82.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 82.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 81.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 81.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 81.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 81.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 81.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 80.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 80.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 79.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 79.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 79.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 79.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 79.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 78.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 77.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 77.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 76.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 75.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 75.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 73.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 73.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 73.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 72.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 72.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 70.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 70.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 66.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 65.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 62.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 61.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 52.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 85.6
FF:10151-102I7 76 years, female 85.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.8
Pig sample Sample description nTPM
Amygdala
nTPM: 76.8
Samples: 4

Max nTPM: 104.1
Min nTPM: 63.2
Sample A Female 104.1
Sample B Female 74.5
Sample C Male 63.2
Sample D Male 65.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 185.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 185.4
Samples: 4

Max nTPM: 190.9
Min nTPM: 178.2
Sample A Male 190.2
Sample B Male 190.9
Sample C Female 178.2
Sample D Female 182.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.7
70744518 Antisense, RP_050725_02_B11, Mouse strain C57BL/6J (56 days, male) 14.8
68196966 Antisense, RP_040922_01_D02, Mouse strain C57BL/6J (56 days, male) 10.5

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