MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.8 nTPM
HPA:103.8 nTPM
GTEx:114.7 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:87.0 nTPM
Mouse:190.0 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.4
2019 Male, age 18, unknown 106.4
1827 Male, age 72, unknown 97.3
2828 Female, age 72, unknown 96.8
2666 Male, age 74, left hemisphere 93.6
2411 Female, age 72, unknown 91.1
1870 Female, age 42, unknown 88.3
1830 Male, age 51, unknown 85.0
2586 Male, age 75, left hemisphere 82.3
1833 Male, age 53, unknown 82.2
2219 Male, age 76, both hemispheres 81.5
Dorsal raphe nucleus
nTPM: 95.9
2298 Female, age 72, unknown 104.1
2047 Male, age 72, unknown 96.3
1828 Male, age 53, unknown 94.5
2750 Male, age 76, both hemispheres 93.5
2016 Female, age 72, unknown 91.2
Inferior colliculus
nTPM: 86.4
2097 Female, age 72, unknown 95.1
1890 Male, age 53, unknown 88.4
1848 Female, age 42, unknown 84.0
2849 Male, age 72, unknown 78.0
Median raphe nucleus
nTPM: 94.1
2220 Male, age 76, midline 94.1
Pedunculopontine tegmental nucleus
nTPM: 97.0
2338 Male, age 61, both hemispheres 107.6
2334 Male, age 80, both hemispheres 94.5
1921 Female, age 85, both hemispheres 88.9
Periaquaductal grey, anterior
nTPM: 96.2
2502 Female, age 75, unknown 98.7
1795 Male, age 51, unknown 97.5
1947 Male, age 18, unknown 92.4
Periaquaductal grey, dorsal
nTPM: 89.8
2850 Male, age 76, both hemispheres 96.6
1831 Male, age 72, unknown 89.9
2464 Female, age 72, unknown 88.7
1840 Male, age 53, unknown 84.2
Periaquaductal grey, lateral
nTPM: 93.2
2272 Male, age 74, both hemispheres 96.4
2140 Male, age 76, both hemispheres 92.1
2053 Male, age 18, unknown 91.0
Pretectal area
nTPM: 98.4
1816 Male, age 51, unknown 110.4
1817 Female, age 42, unknown 107.5
2007 Male, age 72, unknown 105.0
2273 Male, age 74, both hemispheres 103.1
1944 Female, age 72, unknown 101.3
1815 Male, age 53, unknown 98.5
2667 Female, age 75, unknown 97.3
2224 Female, age 72, unknown 96.2
2316 Male, age 76, right hemisphere 90.2
2825 Male, age 18, unknown 86.8
2407 Male, age 75, both hemispheres 86.3
Red nucleus
nTPM: 96.4
1821 Female, age 72, unknown 116.0
1865 Male, age 51, unknown 99.6
2823 Male, age 76, right hemisphere 98.7
1954 Female, age 42, unknown 98.2
1904 Male, age 53, unknown 97.6
2785 Male, age 18, unknown 97.1
2725 Female, age 75, unknown 96.0
2503 Female, age 72, unknown 94.4
2769 Male, age 72, unknown 93.9
2227 Male, age 72, unknown 93.5
2588 Male, age 74, left hemisphere 87.0
2584 Male, age 75, left hemisphere 85.1
Substantia nigra
nTPM: 103.8
1941 Male, age 53, unknown 118.5
1851 Male, age 51, unknown 109.9
1916 Female, age 42, unknown 108.7
2241 Male, age 72, unknown 105.9
2409 Female, age 72, unknown 105.8
2665 Male, age 74, both hemispheres 100.9
1889 Female, age 72, unknown 100.5
2590 Female, age 75, unknown 97.7
2583 Male, age 75, right hemisphere 95.0
2699 Male, age 18, unknown 94.9
Superior colliculus
nTPM: 92.1
2261 Male, age 18, unknown 100.0
2587 Male, age 74, left hemisphere 99.7
2087 Female, age 72, unknown 97.7
1796 Male, age 53, unknown 95.7
2668 Female, age 75, unknown 93.8
1913 Female, age 42, unknown 91.0
1995 Male, age 72, unknown 90.3
2664 Male, age 75, both hemispheres 85.9
1839 Male, age 51, unknown 83.7
1895 Male, age 76, right hemisphere 83.2
Ventral tegmental area
nTPM: 98.6
2410 Female, age 72, unknown 105.3
1915 Female, age 42, unknown 100.1
2218 Male, age 76, both hemispheres 100.0
2223 Female, age 72, unknown 97.2
2021 Male, age 53, unknown 95.2
1942 Male, age 51, unknown 93.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.7
Samples: 139

Max nTPM: 247.7
Min nTPM: 66.7
Std nTPM: 25.6
Median nTPM: 112.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 247.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 187.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 185.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 178.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 169.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 166.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 164.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 164.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 163.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 156.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 150.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.7
FF:10158-103A5 76 years, female 126.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.0
Pig sample Sample description nTPM
Midbrain
nTPM: 74.3
Samples: 4

Max nTPM: 76.1
Min nTPM: 72.6
Sample A Female 74.7
Sample B Female 76.1
Sample C Male 73.7
Sample D Male 72.6
Periaqueductal gray
nTPM: 64.6
Samples: 3

Max nTPM: 69.4
Min nTPM: 54.9
Sample B Female 69.4
Sample C Male 69.4
Sample D Male 54.9
Substantia nigra
nTPM: 79.7
Samples: 4

Max nTPM: 108.9
Min nTPM: 56.1
Sample A Female 108.9
Sample B Female 81.1
Sample C Male 72.5
Sample D Male 56.1
Superior colliculi
nTPM: 87.0
Samples: 4

Max nTPM: 107.1
Min nTPM: 69.9
Sample A Female 107.1
Sample B Female 84.4
Sample C Male 86.4
Sample D Male 69.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 190.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 190.0
Samples: 4

Max nTPM: 198.7
Min nTPM: 183.1
Sample A Male 186.8
Sample B Male 198.7
Sample C Female 183.1
Sample D Female 191.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
70744518 Antisense, RP_050725_02_B11, Mouse strain C57BL/6J (56 days, male) 9.7
68196966 Antisense, RP_040922_01_D02, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.