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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1693.7 nTPM
HPA:1693.7 nTPM
GTEx:1306.7 nTPM
FANTOM5:2307.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA003364
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1693.7
overview
Male, age 65
Small intestine sample 232
nTPM: 2186.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1605.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1338.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1643.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1306.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1306.7
Samples: 187

Max nTPM: 3498.6
Min nTPM: 472.6
Std nTPM: 472.9
Median nTPM: 1223.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3498.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2722.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2585.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2523.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2513.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2435.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2321.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2302.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2233.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2223.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2193.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2162.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2149.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 2132.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2009.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1997.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1991.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1936.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1919.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1905.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1861.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1856.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1853.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1841.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1823.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1821.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1807.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1802.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1793.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1781.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1775.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1743.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1741.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1721.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1684.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1683.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1662.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1616.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1600.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1600.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1597.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1584.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1566.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1561.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1554.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 1551.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1547.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1545.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1535.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1527.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1518.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1517.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1497.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1478.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1476.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1472.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1443.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1443.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1439.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1439.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1433.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1429.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1426.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1426.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1423.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1400.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1388.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1384.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1365.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1365.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1357.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1352.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1351.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1350.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1347.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1337.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1336.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1333.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1332.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1331.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1317.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1317.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1312.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1311.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1285.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1282.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1279.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1265.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1252.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1243.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1236.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1228.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1225.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1223.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1206.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1204.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1201.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1192.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1184.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1177.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1165.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1161.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1159.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1156.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1153.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1149.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1147.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1142.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1141.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1137.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1129.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1119.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1101.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1099.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1092.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1088.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1087.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1086.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1071.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1070.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1060.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1059.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1054.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1053.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1044.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1043.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1024.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1021.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1017.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1014.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1011.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1005.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1004.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1000.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 997.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 994.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 990.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 988.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 980.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 973.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 960.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 958.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 956.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 949.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 942.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 942.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 938.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 935.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 932.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 926.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 914.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 911.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 906.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 900.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 897.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 887.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 883.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 878.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 869.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 868.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 861.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 839.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 828.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 824.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 821.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 813.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 796.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 793.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 793.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 783.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 765.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 756.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 730.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 730.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 728.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 724.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 706.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 699.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 696.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 683.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 676.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 669.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 641.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 613.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 605.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 587.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 472.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2307.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2307.5
FF:10024-101D6 15,40,85 years, mixed 2307.5

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