BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:111.2 nTPM
HPA:111.2 nTPM
GTEx:61.8 nTPM
FANTOM5:97.9 Scaled Tags Per Million
Pig:74.4 nTPM
Mouse:0.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042226Antibody HPA048158
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 106.2
2481 Female, age 94, left hemisphere 110.6
2290 Female, age 72, unknown 108.4
2846 Female, age 79, unknown 108.1
2288 Male, age 75, left hemisphere 106.9
1854 Male, age 80, left hemisphere 106.6
1857 Female, age 85, left hemisphere 104.0
2289 Male, age 61, right hemisphere 103.5
1781 Male, age 74, unknown 101.7
Claustrum
nTPM: 104.7
2198 Male, age 80, both hemispheres 108.8
1956 Male, age 74, unknown 107.3
2196 Female, age 79, unknown 106.2
2292 Female, age 85, both hemispheres 106.1
2491 Male, age 75, both hemispheres 104.9
2284 Female, age 91, both hemispheres 103.6
2392 Female, age 94, both hemispheres 102.6
2568 Male, age 61, both hemispheres 102.1
2645 Female, age 72, unknown 100.3
Globus pallidus, externus
nTPM: 108.6
2772 Female, age 79, unknown 116.4
1996 Male, age 80, right hemisphere 114.4
2395 Male, age 75, both hemispheres 110.4
2567 Female, age 72, unknown 101.9
2646 Male, age 61, right hemisphere 99.7
Globus pallidus, internus
nTPM: 111.2
2287 Male, age 75, right hemisphere 119.2
2778 Female, age 91, both hemispheres 115.5
1818 Male, age 74, unknown 110.7
2483 Female, age 94, right hemisphere 110.5
2111 Female, age 85, right hemisphere 108.9
2037 Male, age 80, right hemisphere 106.9
2566 Female, age 72, unknown 106.7
Nucleus accumbens
nTPM: 106.3
2391 Female, age 94, left hemisphere 112.1
2286 Male, age 75, left hemisphere 110.1
1856 Female, age 91, right hemisphere 109.2
2698 Female, age 72, unknown 106.6
2732 Male, age 80, right hemisphere 104.1
1806 Female, age 85, left hemisphere 104.0
1783 Male, age 74, unknown 102.3
2824 Male, age 61, right hemisphere 102.0
Nucleus basalis of Meynert
nTPM: 105.4
2821 Male, age 75, both hemispheres 112.1
2393 Male, age 80, right hemisphere 105.6
2484 Female, age 94, left hemisphere 105.4
2569 Male, age 61, both hemispheres 98.5
Nucleus of the diagonal band
nTPM: 105.0
1979 Male, age 74, unknown 108.2
1812 Female, age 91, both hemispheres 106.8
2775 Male, age 80, right hemisphere 104.4
2029 Male, age 61, right hemisphere 103.9
2195 Female, age 85, both hemispheres 101.8
Olfactory tubercle
nTPM: 104.8
1846 Male, age 80, right hemisphere 107.1
2856 Male, age 75, right hemisphere 105.5
1998 Female, age 91, both hemispheres 104.3
2487 Female, age 94, left hemisphere 102.4
Putamen
nTPM: 107.0
2482 Female, age 94, left hemisphere 113.1
1937 Female, age 91, right hemisphere 110.1
2466 Female, age 79, unknown 109.0
1829 Male, age 74, unknown 106.5
2647 Male, age 75, left hemisphere 105.1
2489 Female, age 72, unknown 102.9
1838 Male, age 80, right hemisphere 102.4
Septal nuclei
nTPM: 103.3
2199 Male, age 80, right hemisphere 108.4
2009 Female, age 91, both hemispheres 105.4
2629 Female, age 94, right hemisphere 104.0
2031 Female, age 72, unknown 103.9
1960 Male, age 74, unknown 101.5
2394 Male, age 61, left hemisphere 100.8
2059 Female, age 85, both hemispheres 99.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 61.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.6
Samples: 246

Max nTPM: 144.6
Min nTPM: 27.8
Std nTPM: 16.7
Median nTPM: 51.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 144.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 129.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 127.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 108.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 106.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 104.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 103.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 101.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 99.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 99.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 88.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.0
Samples: 246

Max nTPM: 123.7
Min nTPM: 20.0
Std nTPM: 14.8
Median nTPM: 49.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 123.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 115.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 96.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 96.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 91.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 90.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 89.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 89.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 87.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 87.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 84.1
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Brain - Putamen (basal ganglia)
Average nTPM: 61.8
Samples: 205

Max nTPM: 131.2
Min nTPM: 24.7
Std nTPM: 15.1
Median nTPM: 60.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 131.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 114.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 107.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 104.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 102.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 96.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 95.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 95.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 91.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 90.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 90.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.1
FF:10164-103B2 76 years, female 61.1
Globus pallidus
Scaled Tags Per Million: 97.9
FF:10175-103C4 60 years, female 123.1
FF:10161-103A8 76 years, female 72.8
Nucleus accumbens
Scaled Tags Per Million: 41.6
FF:10037-101F1 23-56 years, mixed 41.6
Putamen
Scaled Tags Per Million: 70.0
FF:10176-103C5 60 years, female 70.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 74.4
Pig sample Sample description nTPM
Caudate
nTPM: 56.7
Samples: 4

Max nTPM: 71.5
Min nTPM: 46.4
Sample A Female 52.5
Sample B Female 56.5
Sample C Male 71.5
Sample D Male 46.4
Putamen
nTPM: 74.5
Samples: 4

Max nTPM: 117.3
Min nTPM: 50.1
Sample A Female 50.1
Sample B Female 69.8
Sample C Male 117.3
Sample D Male 60.6
Septum
nTPM: 45.6
Samples: 4

Max nTPM: 56.5
Min nTPM: 30.9
Sample A Female 56.5
Sample B Female 48.7
Sample C Male 46.3
Sample D Male 30.9
Ventral pallidum
nTPM: 48.5
Samples: 4

Max nTPM: 58.6
Min nTPM: 35.1
Sample A Female 58.6
Sample B Female 57.1
Sample C Male 35.1
Sample D Male 43.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 192.0
Samples: 4

Max nTPM: 232.0
Min nTPM: 168.7
Sample A Male 195.6
Sample B Male 232.0
Sample C Female 171.6
Sample D Female 168.7
Septum
nTPM: 201.8
Samples: 4

Max nTPM: 222.9
Min nTPM: 185.5
Sample A Male 185.5
Sample B Male 222.9
Sample C Female 212.9
Sample D Female 185.9
Ventral forebrain
nTPM: 178.2
Samples: 4

Max nTPM: 213.4
Min nTPM: 149.3
Sample A Male 187.5
Sample B Male 162.6
Sample C Female 213.4
Sample D Female 149.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74000678 Antisense, RP_051219_02_E10, Mouse strain C57BL/6J (56 days, male) 0.1
Striatum
Expression energy: 0.1
74000678 Antisense, RP_051219_02_E10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
74000678 Antisense, RP_051219_02_E10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
74000678 Antisense, RP_051219_02_E10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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