MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:115.3 nTPM
HPA:115.3 nTPM
GTEx:75.8 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:0.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 115.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.4
1870 Female, age 42, unknown 108.9
2219 Male, age 76, both hemispheres 108.3
2411 Female, age 72, unknown 107.7
2666 Male, age 74, left hemisphere 106.6
1827 Male, age 72, unknown 105.5
1833 Male, age 53, unknown 105.4
1830 Male, age 51, unknown 105.3
2019 Male, age 18, unknown 105.2
2828 Female, age 72, unknown 103.1
2586 Male, age 75, left hemisphere 97.7
Dorsal raphe nucleus
nTPM: 107.8
2750 Male, age 76, both hemispheres 111.2
2298 Female, age 72, unknown 111.1
2047 Male, age 72, unknown 107.2
1828 Male, age 53, unknown 105.0
2016 Female, age 72, unknown 104.2
Inferior colliculus
nTPM: 108.7
1890 Male, age 53, unknown 112.4
2097 Female, age 72, unknown 108.8
2849 Male, age 72, unknown 107.0
1848 Female, age 42, unknown 106.7
Median raphe nucleus
nTPM: 110.9
2220 Male, age 76, midline 110.9
Pedunculopontine tegmental nucleus
nTPM: 115.3
2334 Male, age 80, both hemispheres 117.1
2338 Male, age 61, both hemispheres 116.9
1921 Female, age 85, both hemispheres 111.8
Periaquaductal grey, anterior
nTPM: 108.2
1947 Male, age 18, unknown 110.2
2502 Female, age 75, unknown 108.8
1795 Male, age 51, unknown 105.7
Periaquaductal grey, dorsal
nTPM: 107.0
2850 Male, age 76, both hemispheres 110.2
1831 Male, age 72, unknown 108.5
2464 Female, age 72, unknown 104.8
1840 Male, age 53, unknown 104.7
Periaquaductal grey, lateral
nTPM: 106.9
2272 Male, age 74, both hemispheres 108.9
2140 Male, age 76, both hemispheres 106.1
2053 Male, age 18, unknown 105.7
Pretectal area
nTPM: 107.2
1944 Female, age 72, unknown 112.7
1817 Female, age 42, unknown 110.9
1816 Male, age 51, unknown 109.4
2007 Male, age 72, unknown 108.0
2224 Female, age 72, unknown 108.0
2273 Male, age 74, both hemispheres 106.7
1815 Male, age 53, unknown 106.6
2667 Female, age 75, unknown 106.6
2316 Male, age 76, right hemisphere 105.4
2825 Male, age 18, unknown 104.4
2407 Male, age 75, both hemispheres 100.3
Red nucleus
nTPM: 107.1
2725 Female, age 75, unknown 111.3
2503 Female, age 72, unknown 111.2
1821 Female, age 72, unknown 110.0
1865 Male, age 51, unknown 109.6
2785 Male, age 18, unknown 108.2
1954 Female, age 42, unknown 107.8
2823 Male, age 76, right hemisphere 106.3
1904 Male, age 53, unknown 105.7
2588 Male, age 74, left hemisphere 104.7
2227 Male, age 72, unknown 104.3
2769 Male, age 72, unknown 104.3
2584 Male, age 75, left hemisphere 101.5
Substantia nigra
nTPM: 110.2
1941 Male, age 53, unknown 117.9
2241 Male, age 72, unknown 115.2
1916 Female, age 42, unknown 113.6
1889 Female, age 72, unknown 112.2
2699 Male, age 18, unknown 111.6
2409 Female, age 72, unknown 110.6
1851 Male, age 51, unknown 110.2
2665 Male, age 74, both hemispheres 104.8
2590 Female, age 75, unknown 104.2
2583 Male, age 75, right hemisphere 101.9
Superior colliculus
nTPM: 105.7
1895 Male, age 76, right hemisphere 110.4
1913 Female, age 42, unknown 107.6
2587 Male, age 74, left hemisphere 107.6
2087 Female, age 72, unknown 107.5
2668 Female, age 75, unknown 106.7
1796 Male, age 53, unknown 106.1
1995 Male, age 72, unknown 105.6
2261 Male, age 18, unknown 104.6
1839 Male, age 51, unknown 103.2
2664 Male, age 75, both hemispheres 97.8
Ventral tegmental area
nTPM: 109.0
2218 Male, age 76, both hemispheres 113.3
1915 Female, age 42, unknown 113.1
2410 Female, age 72, unknown 109.4
1942 Male, age 51, unknown 108.2
2223 Female, age 72, unknown 105.3
2021 Male, age 53, unknown 104.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.8
Samples: 139

Max nTPM: 152.8
Min nTPM: 34.5
Std nTPM: 21.1
Median nTPM: 73.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 152.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 150.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 145.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 132.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 128.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 126.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 115.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 113.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 109.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 105.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.6
FF:10158-103A5 76 years, female 93.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.5
Pig sample Sample description nTPM
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 57.6
Min nTPM: 38.0
Sample A Female 57.6
Sample B Female 51.0
Sample C Male 43.8
Sample D Male 38.0
Periaqueductal gray
nTPM: 39.9
Samples: 3

Max nTPM: 49.1
Min nTPM: 30.8
Sample B Female 39.9
Sample C Male 49.1
Sample D Male 30.8
Substantia nigra
nTPM: 52.8
Samples: 4

Max nTPM: 71.5
Min nTPM: 28.1
Sample A Female 71.5
Sample B Female 50.7
Sample C Male 60.8
Sample D Male 28.1
Superior colliculi
nTPM: 58.5
Samples: 4

Max nTPM: 75.8
Min nTPM: 42.0
Sample A Female 75.8
Sample B Female 53.3
Sample C Male 62.8
Sample D Male 42.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.5
Samples: 4

Max nTPM: 166.1
Min nTPM: 97.0
Sample A Male 166.1
Sample B Male 118.8
Sample C Female 97.0
Sample D Female 120.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74000678 Antisense, RP_051219_02_E10, Mouse strain C57BL/6J (56 days, male) 0.2
Midbrain
Expression energy: 0.2
74000678 Antisense, RP_051219_02_E10, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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