MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA:44.3 nTPM
GTEx:36.4 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:32.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2019 Male, age 18, unknown 70.0
2666 Male, age 74, left hemisphere 36.0
2586 Male, age 75, left hemisphere 31.9
2828 Female, age 72, unknown 30.9
2411 Female, age 72, unknown 30.5
1833 Male, age 53, unknown 29.6
1827 Male, age 72, unknown 27.7
1830 Male, age 51, unknown 27.0
2219 Male, age 76, both hemispheres 25.5
1870 Female, age 42, unknown 25.0
Dorsal raphe nucleus
nTPM: 26.0
2750 Male, age 76, both hemispheres 31.5
2298 Female, age 72, unknown 27.3
1828 Male, age 53, unknown 26.4
2016 Female, age 72, unknown 23.3
2047 Male, age 72, unknown 21.5
Inferior colliculus
nTPM: 25.9
1890 Male, age 53, unknown 31.6
2097 Female, age 72, unknown 29.0
1848 Female, age 42, unknown 22.7
2849 Male, age 72, unknown 20.5
Median raphe nucleus
nTPM: 24.9
2220 Male, age 76, midline 24.9
Pedunculopontine tegmental nucleus
nTPM: 26.8
2334 Male, age 80, both hemispheres 29.5
1921 Female, age 85, both hemispheres 27.2
2338 Male, age 61, both hemispheres 23.7
Periaquaductal grey, anterior
nTPM: 28.8
2502 Female, age 75, unknown 32.1
1795 Male, age 51, unknown 30.8
1947 Male, age 18, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 24.5
1831 Male, age 72, unknown 28.7
2464 Female, age 72, unknown 26.1
2850 Male, age 76, both hemispheres 22.4
1840 Male, age 53, unknown 20.9
Periaquaductal grey, lateral
nTPM: 25.9
2272 Male, age 74, both hemispheres 28.6
2140 Male, age 76, both hemispheres 25.4
2053 Male, age 18, unknown 23.6
Pretectal area
nTPM: 44.3
2007 Male, age 72, unknown 78.3
1817 Female, age 42, unknown 68.3
1944 Female, age 72, unknown 66.5
1815 Male, age 53, unknown 61.7
1816 Male, age 51, unknown 53.2
2667 Female, age 75, unknown 34.5
2316 Male, age 76, right hemisphere 28.9
2273 Male, age 74, both hemispheres 26.3
2407 Male, age 75, both hemispheres 25.7
2224 Female, age 72, unknown 24.3
2825 Male, age 18, unknown 20.1
Red nucleus
nTPM: 37.0
2785 Male, age 18, unknown 63.9
2823 Male, age 76, right hemisphere 41.3
1904 Male, age 53, unknown 39.2
2588 Male, age 74, left hemisphere 36.8
2725 Female, age 75, unknown 36.4
2503 Female, age 72, unknown 36.2
1821 Female, age 72, unknown 35.2
1865 Male, age 51, unknown 34.1
2769 Male, age 72, unknown 31.0
1954 Female, age 42, unknown 30.5
2227 Male, age 72, unknown 30.2
2584 Male, age 75, left hemisphere 28.8
Substantia nigra
nTPM: 35.7
1889 Female, age 72, unknown 51.6
2409 Female, age 72, unknown 46.0
1851 Male, age 51, unknown 37.5
1916 Female, age 42, unknown 37.1
2665 Male, age 74, both hemispheres 34.9
2241 Male, age 72, unknown 32.3
2583 Male, age 75, right hemisphere 30.8
2590 Female, age 75, unknown 29.1
2699 Male, age 18, unknown 28.9
1941 Male, age 53, unknown 28.5
Superior colliculus
nTPM: 35.0
2087 Female, age 72, unknown 51.3
1995 Male, age 72, unknown 41.6
2668 Female, age 75, unknown 39.2
1913 Female, age 42, unknown 36.4
2261 Male, age 18, unknown 33.7
1895 Male, age 76, right hemisphere 33.4
1796 Male, age 53, unknown 30.7
2587 Male, age 74, left hemisphere 30.3
2664 Male, age 75, both hemispheres 27.1
1839 Male, age 51, unknown 26.6
Ventral tegmental area
nTPM: 30.8
2410 Female, age 72, unknown 40.1
1915 Female, age 42, unknown 32.9
2218 Male, age 76, both hemispheres 30.7
1942 Male, age 51, unknown 30.4
2223 Female, age 72, unknown 26.0
2021 Male, age 53, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.4
Samples: 139

Max nTPM: 74.0
Min nTPM: 18.6
Std nTPM: 10.7
Median nTPM: 34.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 74.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 70.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 61.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 58.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 56.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 55.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 54.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 53.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.9
FF:10158-103A5 76 years, female 54.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 37.7
Min nTPM: 23.2
Sample A Female 37.7
Sample B Female 31.4
Sample C Male 34.1
Sample D Male 23.2
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 27.0
Min nTPM: 23.9
Sample B Female 27.0
Sample C Male 24.2
Sample D Male 23.9
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.1
Sample A Female 31.8
Sample B Female 28.1
Sample C Male 28.5
Sample D Male 39.1
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 34.6
Min nTPM: 23.8
Sample A Female 33.2
Sample B Female 23.8
Sample C Male 34.6
Sample D Male 29.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 36.1
Min nTPM: 27.4
Sample A Male 36.1
Sample B Male 27.4
Sample C Female 32.5
Sample D Female 35.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
1822 Antisense, RP_040526_01_F12, Mouse strain C57BL/6J (56 days, male) 0.5
1823 Antisense, RP_040526_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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