BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:20.8 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:59.0 nTPM
Allen mouse:1.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.6
1857 Female, age 85, left hemisphere 27.0
2481 Female, age 94, left hemisphere 23.5
1854 Male, age 80, left hemisphere 21.8
2288 Male, age 75, left hemisphere 19.5
2289 Male, age 61, right hemisphere 19.0
2290 Female, age 72, unknown 16.9
2846 Female, age 79, unknown 15.2
1781 Male, age 74, unknown 14.0
Claustrum
nTPM: 12.2
2645 Female, age 72, unknown 13.3
1956 Male, age 74, unknown 12.7
2392 Female, age 94, both hemispheres 12.7
2198 Male, age 80, both hemispheres 12.6
2284 Female, age 91, both hemispheres 12.5
2491 Male, age 75, both hemispheres 12.5
2196 Female, age 79, unknown 12.0
2568 Male, age 61, both hemispheres 10.9
2292 Female, age 85, both hemispheres 10.3
Globus pallidus, externus
nTPM: 12.1
1996 Male, age 80, right hemisphere 14.1
2646 Male, age 61, right hemisphere 12.2
2395 Male, age 75, both hemispheres 11.9
2772 Female, age 79, unknown 11.9
2567 Female, age 72, unknown 10.5
Globus pallidus, internus
nTPM: 12.3
2483 Female, age 94, right hemisphere 14.5
2037 Male, age 80, right hemisphere 13.8
1818 Male, age 74, unknown 13.0
2287 Male, age 75, right hemisphere 11.9
2778 Female, age 91, both hemispheres 11.7
2111 Female, age 85, right hemisphere 11.1
2566 Female, age 72, unknown 10.4
Nucleus accumbens
nTPM: 17.5
1806 Female, age 85, left hemisphere 21.8
2286 Male, age 75, left hemisphere 21.8
1856 Female, age 91, right hemisphere 20.8
2391 Female, age 94, left hemisphere 18.8
2732 Male, age 80, right hemisphere 15.2
1783 Male, age 74, unknown 14.7
2698 Female, age 72, unknown 13.3
2824 Male, age 61, right hemisphere 13.2
Nucleus basalis of Meynert
nTPM: 14.9
2393 Male, age 80, right hemisphere 19.3
2484 Female, age 94, left hemisphere 14.8
2569 Male, age 61, both hemispheres 13.2
2821 Male, age 75, both hemispheres 12.3
Nucleus of the diagonal band
nTPM: 15.5
2195 Female, age 85, both hemispheres 16.3
2775 Male, age 80, right hemisphere 16.3
1812 Female, age 91, both hemispheres 15.8
1979 Male, age 74, unknown 15.2
2029 Male, age 61, right hemisphere 13.8
Olfactory tubercle
nTPM: 15.9
2856 Male, age 75, right hemisphere 18.5
1846 Male, age 80, right hemisphere 17.7
1998 Female, age 91, both hemispheres 14.9
2487 Female, age 94, left hemisphere 12.5
Putamen
nTPM: 17.9
2482 Female, age 94, left hemisphere 21.8
1838 Male, age 80, right hemisphere 20.2
1937 Female, age 91, right hemisphere 19.1
2489 Female, age 72, unknown 16.7
2466 Female, age 79, unknown 16.1
1829 Male, age 74, unknown 15.9
2647 Male, age 75, left hemisphere 15.2
Septal nuclei
nTPM: 15.6
2059 Female, age 85, both hemispheres 20.7
1960 Male, age 74, unknown 16.6
2031 Female, age 72, unknown 15.7
2199 Male, age 80, right hemisphere 15.5
2009 Female, age 91, both hemispheres 14.7
2629 Female, age 94, right hemisphere 13.3
2394 Male, age 61, left hemisphere 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.8
Samples: 246

Max nTPM: 54.9
Min nTPM: 1.9
Std nTPM: 9.7
Median nTPM: 19.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 54.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 53.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 50.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 49.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 46.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 46.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 45.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 42.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 41.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 41.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 40.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.5
Samples: 246

Max nTPM: 46.2
Min nTPM: 0.9
Std nTPM: 7.6
Median nTPM: 14.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 46.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 38.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 35.5
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 34.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 34.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 32.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 32.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 31.7
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 30.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 30.2
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 30.1
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Brain - Putamen (basal ganglia)
Average nTPM: 19.7
Samples: 205

Max nTPM: 55.8
Min nTPM: 1.4
Std nTPM: 10.1
Median nTPM: 19.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 55.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 54.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 48.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 46.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 42.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 42.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 41.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 41.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 41.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 41.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 39.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.3
FF:10164-103B2 76 years, female 60.3
Globus pallidus
Scaled Tags Per Million: 19.1
FF:10161-103A8 76 years, female 20.9
FF:10175-103C4 60 years, female 17.3
Nucleus accumbens
Scaled Tags Per Million: 35.0
FF:10037-101F1 23-56 years, mixed 35.0
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Caudate
nTPM: 32.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 35.3
Sample C Male 33.9
Sample D Male 33.1
Putamen
nTPM: 35.6
Samples: 4

Max nTPM: 61.3
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 37.0
Sample C Male 61.3
Sample D Male 31.1
Septum
nTPM: 22.9
Samples: 4

Max nTPM: 32.7
Min nTPM: 4.2
Sample A Female 29.3
Sample B Female 32.7
Sample C Male 4.2
Sample D Male 25.4
Ventral pallidum
nTPM: 27.7
Samples: 4

Max nTPM: 37.8
Min nTPM: 8.1
Sample A Female 37.8
Sample B Female 33.2
Sample C Male 8.1
Sample D Male 31.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.0
Samples: 4

Max nTPM: 63.7
Min nTPM: 56.9
Sample A Male 56.9
Sample B Male 57.1
Sample C Female 58.2
Sample D Female 63.7
Septum
nTPM: 43.3
Samples: 4

Max nTPM: 53.6
Min nTPM: 31.6
Sample A Male 31.6
Sample B Male 53.1
Sample C Female 53.6
Sample D Female 34.7
Ventral forebrain
nTPM: 50.0
Samples: 4

Max nTPM: 53.4
Min nTPM: 46.5
Sample A Male 50.3
Sample B Male 46.5
Sample C Female 53.4
Sample D Female 49.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69874090 Antisense, RP_050512_02_F05, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 0.8
69874090 Antisense, RP_050512_02_F05, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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