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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.0 nTPM
HPA:84.0 nTPM
GTEx:205.2 nTPM
FANTOM5:153.9 Scaled Tags Per Million
Pig:31.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 84.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 74.9
1981 Female, age 72, midline 86.1
2816 Male, age 47, midline 79.2
2048 Male, age 55, midline 74.2
2194 Female, age 79, both hemispheres 73.8
2565 Male, age 75, midline 61.1
Cervical spinal cord, dorsal horn
nTPM: 84.0
2296 Male, age 66, both hemispheres 131.9
2173 Female, age 72, unknown 103.6
2069 Male, age 47, both hemispheres 77.7
1877 Male, age 55, unknown 75.9
2721 Male, age 90, both hemispheres 58.9
2297 Male, age 75, both hemispheres 55.8
Cervical spinal cord, ventral horn
nTPM: 82.8
2098 Female, age 72, unknown 95.8
2068 Male, age 55, unknown 89.3
2295 Male, age 66, both hemispheres 83.6
2480 Male, age 75, both hemispheres 78.0
2820 Female, age 79, both hemispheres 76.8
2809 Male, age 90, both hemispheres 73.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 205.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 205.2
Samples: 159

Max nTPM: 433.3
Min nTPM: 60.0
Std nTPM: 80.8
Median nTPM: 199.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 433.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 420.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 405.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 402.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 389.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 388.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 377.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 355.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 347.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 340.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 339.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 329.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 324.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 317.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 315.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 312.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 311.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 309.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 308.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 307.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 307.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 305.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 292.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 291.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 290.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 285.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 281.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 280.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 275.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 272.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 268.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 268.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 267.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 264.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 264.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 263.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 261.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 259.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 257.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 257.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 254.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 248.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 246.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 245.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 245.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 244.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 243.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 242.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 241.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 241.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 240.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 238.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 235.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 234.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 233.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 233.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 229.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 227.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 226.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 222.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 222.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 221.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 219.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 216.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 216.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 215.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 214.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 213.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 212.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 210.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 210.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 209.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 207.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 204.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 203.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 203.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 202.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 201.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 199.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 199.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 198.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 197.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 197.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 196.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 194.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 194.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 192.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 192.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 186.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 184.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 183.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 182.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 180.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 178.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 176.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 174.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 172.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 172.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 170.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 169.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 168.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 166.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 166.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 164.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 162.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 161.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 159.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 158.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 158.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 157.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 157.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 155.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 153.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 151.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 145.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 144.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 143.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 142.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 141.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 140.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 137.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 130.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 128.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 128.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 127.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 127.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 126.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 126.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 123.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 120.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 120.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 119.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 119.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 116.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 111.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 108.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 100.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 96.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 95.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 89.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 87.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 84.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 83.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 81.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 78.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 73.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 67.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 64.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 153.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 153.9
FF:10181-103D1 60 years, female 220.6
FF:10159-103A6 76 years, female 87.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.9
Samples: 4

Max nTPM: 29.7
Min nTPM: 24.0
Sample A Female 26.5
Sample B Female 29.7
Sample C Male 24.0
Sample D Male 27.3
Ventral spinal cord
nTPM: 31.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 23.4
Sample A Female 32.9
Sample B Female 33.0
Sample C Male 23.4
Sample D Male 37.2

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