MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:346.9 nTPM
HPA:346.9 nTPM
GTEx:269.3 nTPM
FANTOM5:695.8 Scaled Tags Per Million
Pig:246.7 nTPM
Mouse:224.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 346.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 333.6
1870 Female, age 42, unknown 356.7
2828 Female, age 72, unknown 356.0
2411 Female, age 72, unknown 346.4
2586 Male, age 75, left hemisphere 342.2
1833 Male, age 53, unknown 338.7
1827 Male, age 72, unknown 333.3
2666 Male, age 74, left hemisphere 330.6
1830 Male, age 51, unknown 327.1
2019 Male, age 18, unknown 321.1
2219 Male, age 76, both hemispheres 283.8
Dorsal raphe nucleus
nTPM: 344.8
2016 Female, age 72, unknown 359.5
2750 Male, age 76, both hemispheres 343.5
2298 Female, age 72, unknown 342.4
1828 Male, age 53, unknown 341.8
2047 Male, age 72, unknown 336.9
Inferior colliculus
nTPM: 326.8
1848 Female, age 42, unknown 343.6
2849 Male, age 72, unknown 322.0
1890 Male, age 53, unknown 321.2
2097 Female, age 72, unknown 320.5
Median raphe nucleus
nTPM: 325.7
2220 Male, age 76, midline 325.7
Pedunculopontine tegmental nucleus
nTPM: 324.2
2338 Male, age 61, both hemispheres 328.0
2334 Male, age 80, both hemispheres 326.3
1921 Female, age 85, both hemispheres 318.5
Periaquaductal grey, anterior
nTPM: 342.1
2502 Female, age 75, unknown 347.4
1947 Male, age 18, unknown 346.1
1795 Male, age 51, unknown 332.8
Periaquaductal grey, dorsal
nTPM: 346.9
2850 Male, age 76, both hemispheres 375.2
1840 Male, age 53, unknown 344.3
2464 Female, age 72, unknown 335.3
1831 Male, age 72, unknown 332.7
Periaquaductal grey, lateral
nTPM: 343.3
2140 Male, age 76, both hemispheres 359.1
2053 Male, age 18, unknown 351.2
2272 Male, age 74, both hemispheres 319.7
Pretectal area
nTPM: 329.8
2667 Female, age 75, unknown 348.3
1817 Female, age 42, unknown 339.6
2273 Male, age 74, both hemispheres 338.1
2224 Female, age 72, unknown 337.2
2825 Male, age 18, unknown 335.5
1815 Male, age 53, unknown 332.1
2316 Male, age 76, right hemisphere 331.7
1944 Female, age 72, unknown 325.7
1816 Male, age 51, unknown 321.7
2007 Male, age 72, unknown 311.5
2407 Male, age 75, both hemispheres 306.5
Red nucleus
nTPM: 343.7
1821 Female, age 72, unknown 375.9
1904 Male, age 53, unknown 361.5
1865 Male, age 51, unknown 356.5
2503 Female, age 72, unknown 355.2
1954 Female, age 42, unknown 353.7
2823 Male, age 76, right hemisphere 352.3
2769 Male, age 72, unknown 351.1
2227 Male, age 72, unknown 350.7
2725 Female, age 75, unknown 329.1
2588 Male, age 74, left hemisphere 324.2
2785 Male, age 18, unknown 320.1
2584 Male, age 75, left hemisphere 294.3
Substantia nigra
nTPM: 330.8
2699 Male, age 18, unknown 359.2
1851 Male, age 51, unknown 348.2
1916 Female, age 42, unknown 337.9
2241 Male, age 72, unknown 332.2
1889 Female, age 72, unknown 328.7
2590 Female, age 75, unknown 328.6
2409 Female, age 72, unknown 323.9
2665 Male, age 74, both hemispheres 319.2
2583 Male, age 75, right hemisphere 316.3
1941 Male, age 53, unknown 313.9
Superior colliculus
nTPM: 334.2
1995 Male, age 72, unknown 361.7
1913 Female, age 42, unknown 359.5
2664 Male, age 75, both hemispheres 335.6
1839 Male, age 51, unknown 334.5
2587 Male, age 74, left hemisphere 332.4
1796 Male, age 53, unknown 330.2
2668 Female, age 75, unknown 325.4
2261 Male, age 18, unknown 323.1
2087 Female, age 72, unknown 321.5
1895 Male, age 76, right hemisphere 318.3
Ventral tegmental area
nTPM: 340.0
2410 Female, age 72, unknown 357.9
2021 Male, age 53, unknown 344.9
2223 Female, age 72, unknown 338.9
1915 Female, age 42, unknown 333.8
2218 Male, age 76, both hemispheres 333.2
1942 Male, age 51, unknown 331.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 269.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 269.3
Samples: 139

Max nTPM: 558.8
Min nTPM: 133.6
Std nTPM: 70.6
Median nTPM: 253.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 558.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 534.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 474.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 462.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 443.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 431.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 426.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 418.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 406.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 382.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 382.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 695.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 695.8
FF:10158-103A5 76 years, female 695.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 246.7
Pig sample Sample description nTPM
Midbrain
nTPM: 246.7
Samples: 4

Max nTPM: 374.2
Min nTPM: 175.5
Sample A Female 374.2
Sample B Female 240.1
Sample C Male 197.0
Sample D Male 175.5
Periaqueductal gray
nTPM: 232.0
Samples: 3

Max nTPM: 245.6
Min nTPM: 219.6
Sample B Female 230.7
Sample C Male 245.6
Sample D Male 219.6
Substantia nigra
nTPM: 241.5
Samples: 4

Max nTPM: 279.2
Min nTPM: 211.8
Sample A Female 279.2
Sample B Female 211.8
Sample C Male 234.3
Sample D Male 240.7
Superior colliculi
nTPM: 216.3
Samples: 4

Max nTPM: 253.9
Min nTPM: 188.1
Sample A Female 253.9
Sample B Female 188.1
Sample C Male 206.8
Sample D Male 216.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.1
Samples: 4

Max nTPM: 247.5
Min nTPM: 208.4
Sample A Male 247.5
Sample B Male 213.2
Sample C Female 208.4
Sample D Female 227.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
2663 Antisense, RP_Baylor_103335, Mouse strain C57BL/6J (56 days, male) 7.5
68300908 Antisense, RP_041129_02_D05, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.