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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:374.4 nTPM
HPA:374.4 nTPM
FANTOM5:736.2 Scaled Tags Per Million
Pig:255.0 nTPM
Allen mouse:3.5 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 374.4
Sample id Sample description nTPM
Area postrema
nTPM: 363.7
2799 Male, age 61, both hemispheres 408.7
2306 Male, age 80, both hemispheres 355.1
2054 Male, age 76, both hemispheres 327.3
Cuneate nuclei
nTPM: 318.5
2376 Male, age 61, both hemispheres 334.2
2381 Male, age 80, both hemispheres 323.2
2131 Male, age 76, both hemispheres 298.1
Dorsal medullary reticular nucleus
nTPM: 312.4
2040 Female, age 85, both hemispheres 330.9
2373 Male, age 61, both hemispheres 309.8
2088 Male, age 76, both hemispheres 296.6
Dorsal motor vagal complex
nTPM: 320.0
2797 Male, age 61, both hemispheres 349.1
2000 Male, age 74, unknown 336.4
2185 Male, age 76, both hemispheres 333.1
2643 Male, age 74, both hemispheres 320.4
2813 Female, age 72, unknown 320.0
2844 Male, age 55, unknown 320.0
2133 Female, age 91, both hemispheres 297.9
2807 Female, age 85, both hemispheres 283.1
Gigantocellular reticular nuclei, medullary
nTPM: 316.6
2387 Female, age 91, both hemispheres 339.4
1876 Female, age 85, both hemispheres 337.1
2314 Male, age 61, both hemispheres 327.1
2022 Male, age 76, right hemisphere 307.1
2462 Male, age 74, both hemispheres 298.5
2310 Male, age 80, both hemispheres 290.7
Gigantocellular reticular nuclei, pars
nTPM: 298.3
2084 Female, age 85, both hemispheres 307.4
2706 Male, age 80, both hemispheres 300.5
2336 Male, age 61, both hemispheres 296.2
2330 Male, age 80, both hemispheres 293.8
2168 Male, age 76, both hemispheres 293.7
Inferior olive
nTPM: 352.0
2379 Male, age 80, both hemispheres 368.8
2563 Male, age 74, both hemispheres 362.8
2178 Male, age 61, both hemispheres 353.7
2085 Female, age 85, both hemispheres 347.8
2628 Female, age 91, both hemispheres 327.0
Lateral medullary reticular nucleus
nTPM: 342.2
2852 Male, age 80, both hemispheres 358.3
2804 Female, age 91, both hemispheres 345.0
2305 Male, age 74, both hemispheres 340.9
2190 Female, age 85, both hemispheres 340.7
2044 Male, age 76, both hemispheres 338.0
2374 Male, age 61, both hemispheres 330.2
Medial vestibular nucleus
nTPM: 320.2
2801 Male, age 74, both hemispheres 327.5
2624 Male, age 61, both hemispheres 323.7
2803 Female, age 91, both hemispheres 320.5
2743 Female, age 85, both hemispheres 319.7
2093 Male, age 80, both hemispheres 316.7
2134 Male, age 76, both hemispheres 313.1
Motor hypoglossal nucleus
nTPM: 308.6
2125 Female, age 91, both hemispheres 323.2
2182 Male, age 80, both hemispheres 313.2
2277 Male, age 76, both hemispheres 308.8
2132 Female, age 85, both hemispheres 301.4
2461 Male, age 61, both hemispheres 296.3
Nucleus ambiguus
nTPM: 337.9
2071 Male, age 76, both hemispheres 390.6
2096 Female, age 85, both hemispheres 285.3
Nucleus cuneatus
nTPM: 333.5
2380 Male, age 80, both hemispheres 367.3
2808 Female, age 85, both hemispheres 347.6
2564 Male, age 74, both hemispheres 342.4
2562 Male, age 61, both hemispheres 329.3
2100 Male, age 76, both hemispheres 309.6
2805 Female, age 91, both hemispheres 304.9
Nucleus gracilis
nTPM: 340.9
2627 Male, age 74, both hemispheres 346.5
2382 Male, age 80, both hemispheres 345.4
2299 Female, age 85, both hemispheres 330.9
Nucleus raphe magnus
nTPM: 299.3
2051 Male, age 76, both hemispheres 318.9
2160 Male, age 61, both hemispheres 307.1
2455 Male, age 74, both hemispheres 299.7
2459 Female, age 91, both hemispheres 298.5
2328 Male, age 80, both hemispheres 296.2
2172 Female, age 85, both hemispheres 275.1
Nucleus raphe obscurus
nTPM: 358.2
2142 Male, age 76, midline 396.2
2845 Female, age 85, midline 351.2
2800 Male, age 61, midline 327.0
Nucleus raphe pallidus
nTPM: 374.4
1924 Male, age 61, midline 415.2
2145 Male, age 76, midline 381.0
2183 Male, age 80, midline 327.0
Nucleus tractus solitarii
nTPM: 305.2
2144 Female, age 91, right hemisphere 329.0
2656 Male, age 76, both hemispheres 320.0
2191 Female, age 85, both hemispheres 299.3
2307 Male, age 80, both hemispheres 272.6
Parvicellular reticular nuclei
nTPM: 316.1
2119 Male, age 80, both hemispheres 339.2
2095 Male, age 76, both hemispheres 324.4
2558 Male, age 74, both hemispheres 284.5
Parvicellular reticular nuclei, medullary
nTPM: 303.6
2091 Female, age 85, both hemispheres 308.7
2189 Female, age 91, both hemispheres 303.2
2181 Male, age 80, left hemisphere 299.0
Peritrigeminal nucleus
nTPM: 345.8
2136 Male, age 76, both hemispheres 360.4
2067 Female, age 85, both hemispheres 353.6
2179 Male, age 61, both hemispheres 323.4
Prepositus hypoglossal nucleus
nTPM: 332.0
2855 Female, age 85, right hemisphere 341.3
2086 Male, age 80, both hemispheres 322.6
Spinal trigeminal nucleus, caudal
nTPM: 307.3
2312 Male, age 61, both hemispheres 324.1
2308 Male, age 80, both hemispheres 309.4
2447 Male, age 76, both hemispheres 306.6
2642 Male, age 74, both hemispheres 298.9
2390 Female, age 91, both hemispheres 297.7
Spinal trigeminal nucleus, interpolar
nTPM: 313.5
2066 Male, age 76, right hemisphere 326.1
2033 Male, age 80, both hemispheres 317.0
2386 Female, age 85, both hemispheres 315.1
2625 Male, age 61, both hemispheres 314.7
2389 Female, age 91, both hemispheres 294.6
Spinal vestibular nucleus
nTPM: 315.8
2748 Male, age 76, both hemispheres 330.0
2806 Female, age 85, both hemispheres 323.6
2186 Female, age 91, both hemispheres 315.4
2796 Male, age 61, both hemispheres 311.4
2384 Male, age 74, both hemispheres 309.9
2780 Male, age 80, both hemispheres 304.7
Ventral medullary reticular nucleus
nTPM: 324.4
2372 Male, age 61, both hemispheres 337.7
2060 Male, age 76, both hemispheres 311.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 329.7
1986 Male, age 76, both hemispheres 350.5
2302 Female, age 91, both hemispheres 328.0
2180 Male, age 61, both hemispheres 325.9
2118 Male, age 80, both hemispheres 325.8
2741 Female, age 85, both hemispheres 318.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 736.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 736.2
FF:10038-101F2 18-64 years, mixed 822.2
FF:10174-103C3 60 years, female 707.5
FF:10155-103A2 76 years, female 679.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 255.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 255.0
Samples: 4

Max nTPM: 284.2
Min nTPM: 235.2
Sample A Female 239.3
Sample B Female 235.2
Sample C Male 261.1
Sample D Male 284.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 3.5
2663 Antisense, RP_Baylor_103335, Mouse strain C57BL/6J (56 days, male) 5.6
68300908 Antisense, RP_041129_02_D05, Mouse strain C57BL/6J (56 days, male) 1.5

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