We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TMBIM6
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • TMBIM6
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:332.1 nTPM
HPA:332.1 nTPM
GTEx:266.3 nTPM
FANTOM5:476.5 Scaled Tags Per Million
Pig:155.6 nTPM
Mouse:240.8 nTPM
Allen mouse:9.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 332.1
Sample id Sample description nTPM
Amygdala
nTPM: 332.1
2695 Female, age 67, right hemisphere 349.0
2514 Male, age 75, right hemisphere 342.9
2814 Male, age 76, right hemisphere 337.8
1987 Female, age 91, left hemisphere 324.7
2517 Female, age 94, left hemisphere 306.0
Basal amygdala
nTPM: 293.9
2609 Male, age 75, right hemisphere 336.5
1955 Male, age 76, both hemispheres 306.5
2110 Male, age 80, left hemisphere 297.3
2243 Female, age 91, right hemisphere 294.9
2685 Female, age 94, left hemisphere 281.0
2827 Female, age 67, right hemisphere 247.1
Central amygdala
nTPM: 311.4
2515 Male, age 75, right hemisphere 337.9
1905 Male, age 76, both hemispheres 329.0
2701 Female, age 91, right hemisphere 305.6
2239 Male, age 80, left hemisphere 295.6
2826 Female, age 94, left hemisphere 288.9
Corticomedial amygdala
nTPM: 297.8
2428 Male, age 75, right hemisphere 343.3
2829 Male, age 80, left hemisphere 303.0
2240 Male, age 76, both hemispheres 300.8
2429 Female, age 94, left hemisphere 299.0
2242 Female, age 91, right hemisphere 297.1
2535 Female, age 67, right hemisphere 243.9
Lateral amygdala
nTPM: 297.1
2516 Male, age 75, right hemisphere 329.9
1883 Male, age 76, both hemispheres 315.5
2256 Male, age 80, left hemisphere 294.7
2255 Female, age 91, right hemisphere 291.0
2534 Female, age 94, left hemisphere 285.2
2830 Female, age 67, right hemisphere 266.1
Stria terminalis, bed nucleus
nTPM: 286.4
2201 Male, age 74, unknown 290.1
1974 Female, age 91, both hemispheres 285.7
2486 Female, age 94, both hemispheres 283.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 266.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 266.3
Samples: 152

Max nTPM: 539.8
Min nTPM: 141.5
Std nTPM: 63.5
Median nTPM: 257.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 539.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 494.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 431.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 413.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 404.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 403.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 391.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 372.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 367.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 365.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 359.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 352.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 351.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 350.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 350.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 348.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 348.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 347.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 342.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 341.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 338.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 332.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 329.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 326.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 322.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 320.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 320.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 315.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 313.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 311.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 308.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 306.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 306.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 302.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 300.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 299.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 299.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 299.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 298.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 297.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 295.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 293.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 293.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 292.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 291.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 291.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 290.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 289.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 289.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 288.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 287.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 285.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 284.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 283.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 282.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 281.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 281.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 280.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 278.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 278.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 275.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 274.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 270.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 269.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 268.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 267.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 266.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 265.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 265.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 265.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 264.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 264.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 264.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 259.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 258.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 257.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 257.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 257.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 254.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 254.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 252.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 249.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 249.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 249.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 247.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 247.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 246.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 245.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 244.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 244.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 244.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 244.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 243.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 243.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 242.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 242.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 241.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 241.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 236.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 236.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 235.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 235.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 235.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 234.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 234.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 230.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 230.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 230.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 227.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 225.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 224.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 222.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 219.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 219.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 218.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 218.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 216.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 215.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 213.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 212.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 212.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 210.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 210.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 208.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 204.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 203.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 202.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 202.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 202.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 202.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 201.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 201.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 199.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 199.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 199.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 197.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 192.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 192.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 190.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 190.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 189.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 188.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 186.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 183.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 182.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 181.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 174.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 172.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 166.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 164.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 141.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 476.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 476.5
FF:10151-102I7 76 years, female 476.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 155.6
Pig sample Sample description nTPM
Amygdala
nTPM: 155.6
Samples: 4

Max nTPM: 181.0
Min nTPM: 137.9
Sample A Female 181.0
Sample B Female 158.6
Sample C Male 144.9
Sample D Male 137.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 240.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 240.8
Samples: 4

Max nTPM: 257.6
Min nTPM: 226.0
Sample A Male 243.5
Sample B Male 226.0
Sample C Female 257.6
Sample D Female 236.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.3
68300908 Antisense, RP_041129_02_D05, Mouse strain C57BL/6J (56 days, male) 10.2
2663 Antisense, RP_Baylor_103335, Mouse strain C57BL/6J (56 days, male) 8.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.