MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:271.1 nTPM
HPA:271.1 nTPM
GTEx:161.8 nTPM
FANTOM5:475.8 Scaled Tags Per Million
Pig:110.4 nTPM
Mouse:85.6 nTPM
Allen mouse:15.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 271.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 202.6
1830 Male, age 51, unknown 260.8
1833 Male, age 53, unknown 251.8
2411 Female, age 72, unknown 238.9
1870 Female, age 42, unknown 233.1
2019 Male, age 18, unknown 230.3
2666 Male, age 74, left hemisphere 203.3
2828 Female, age 72, unknown 180.5
2586 Male, age 75, left hemisphere 143.3
1827 Male, age 72, unknown 143.2
2219 Male, age 76, both hemispheres 140.6
Dorsal raphe nucleus
nTPM: 144.3
2750 Male, age 76, both hemispheres 242.6
2016 Female, age 72, unknown 153.1
1828 Male, age 53, unknown 141.3
2047 Male, age 72, unknown 95.4
2298 Female, age 72, unknown 89.0
Inferior colliculus
nTPM: 139.1
1848 Female, age 42, unknown 148.2
1890 Male, age 53, unknown 146.6
2849 Male, age 72, unknown 136.7
2097 Female, age 72, unknown 125.0
Median raphe nucleus
nTPM: 130.0
2220 Male, age 76, midline 130.0
Pedunculopontine tegmental nucleus
nTPM: 187.5
2338 Male, age 61, both hemispheres 208.3
2334 Male, age 80, both hemispheres 196.4
1921 Female, age 85, both hemispheres 157.8
Periaquaductal grey, anterior
nTPM: 123.8
2502 Female, age 75, unknown 149.6
1947 Male, age 18, unknown 128.8
1795 Male, age 51, unknown 92.8
Periaquaductal grey, dorsal
nTPM: 107.6
2464 Female, age 72, unknown 157.5
1831 Male, age 72, unknown 111.5
2850 Male, age 76, both hemispheres 82.8
1840 Male, age 53, unknown 78.7
Periaquaductal grey, lateral
nTPM: 102.0
2053 Male, age 18, unknown 123.3
2272 Male, age 74, both hemispheres 106.3
2140 Male, age 76, both hemispheres 76.3
Pretectal area
nTPM: 132.7
1815 Male, age 53, unknown 183.4
2316 Male, age 76, right hemisphere 178.1
1817 Female, age 42, unknown 160.0
2407 Male, age 75, both hemispheres 144.8
2007 Male, age 72, unknown 144.3
2825 Male, age 18, unknown 132.1
1944 Female, age 72, unknown 108.7
2224 Female, age 72, unknown 106.5
2273 Male, age 74, both hemispheres 102.8
2667 Female, age 75, unknown 99.6
1816 Male, age 51, unknown 99.5
Red nucleus
nTPM: 271.1
1865 Male, age 51, unknown 344.7
1904 Male, age 53, unknown 319.0
1821 Female, age 72, unknown 315.9
2823 Male, age 76, right hemisphere 294.6
2503 Female, age 72, unknown 284.2
2227 Male, age 72, unknown 270.5
2769 Male, age 72, unknown 264.2
1954 Female, age 42, unknown 262.9
2785 Male, age 18, unknown 246.7
2588 Male, age 74, left hemisphere 239.8
2725 Female, age 75, unknown 231.1
2584 Male, age 75, left hemisphere 179.7
Substantia nigra
nTPM: 163.9
2409 Female, age 72, unknown 207.3
2241 Male, age 72, unknown 184.2
1889 Female, age 72, unknown 178.7
1851 Male, age 51, unknown 178.4
2590 Female, age 75, unknown 173.7
2583 Male, age 75, right hemisphere 158.1
2699 Male, age 18, unknown 150.9
2665 Male, age 74, both hemispheres 150.2
1941 Male, age 53, unknown 137.2
1916 Female, age 42, unknown 120.7
Superior colliculus
nTPM: 173.4
1995 Male, age 72, unknown 239.3
1913 Female, age 42, unknown 234.6
1895 Male, age 76, right hemisphere 221.4
2587 Male, age 74, left hemisphere 188.9
2668 Female, age 75, unknown 188.4
1839 Male, age 51, unknown 175.8
1796 Male, age 53, unknown 132.1
2087 Female, age 72, unknown 124.7
2261 Male, age 18, unknown 121.6
2664 Male, age 75, both hemispheres 107.4
Ventral tegmental area
nTPM: 168.7
2223 Female, age 72, unknown 232.3
2410 Female, age 72, unknown 216.7
1915 Female, age 42, unknown 146.6
1942 Male, age 51, unknown 145.9
2021 Male, age 53, unknown 136.5
2218 Male, age 76, both hemispheres 134.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.8
Samples: 139

Max nTPM: 457.0
Min nTPM: 54.5
Std nTPM: 83.1
Median nTPM: 134.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 457.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 428.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 418.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 385.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 369.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 365.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 363.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 341.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 340.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 311.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 308.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 475.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 475.8
FF:10158-103A5 76 years, female 475.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.4
Pig sample Sample description nTPM
Midbrain
nTPM: 110.4
Samples: 4

Max nTPM: 193.2
Min nTPM: 60.0
Sample A Female 193.2
Sample B Female 117.6
Sample C Male 60.0
Sample D Male 70.8
Periaqueductal gray
nTPM: 80.9
Samples: 3

Max nTPM: 97.2
Min nTPM: 56.3
Sample B Female 97.2
Sample C Male 56.3
Sample D Male 89.2
Substantia nigra
nTPM: 108.0
Samples: 4

Max nTPM: 188.4
Min nTPM: 66.7
Sample A Female 92.9
Sample B Female 66.7
Sample C Male 83.8
Sample D Male 188.4
Superior colliculi
nTPM: 82.1
Samples: 4

Max nTPM: 110.6
Min nTPM: 44.5
Sample A Female 83.8
Sample B Female 44.5
Sample C Male 89.5
Sample D Male 110.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 88.4
Min nTPM: 83.3
Sample A Male 83.3
Sample B Male 86.7
Sample C Female 88.4
Sample D Female 84.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.6
68080699 Antisense, RP_040929_01_F07, Mouse strain C57BL/6J (56 days, male) 15.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.