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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:111.1 nTPM
HPA:111.1 nTPM
GTEx:125.2 nTPM
FANTOM5:607.5 Scaled Tags Per Million
Pig:133.8 nTPM
Mouse:1107.1 nTPM
Allen mouse:35.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 111.1
Sample id Sample description nTPM
Amygdala
nTPM: 6.6
1987 Female, age 91, left hemisphere 26.1
2814 Male, age 76, right hemisphere 3.9
2517 Female, age 94, left hemisphere 3.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 17.6
2243 Female, age 91, right hemisphere 54.4
2685 Female, age 94, left hemisphere 30.8
2110 Male, age 80, left hemisphere 16.4
1955 Male, age 76, both hemispheres 3.9
2609 Male, age 75, right hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 6.9
2239 Male, age 80, left hemisphere 22.2
2701 Female, age 91, right hemisphere 12.3
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 19.6
2829 Male, age 80, left hemisphere 50.4
2242 Female, age 91, right hemisphere 35.5
2429 Female, age 94, left hemisphere 21.8
2240 Male, age 76, both hemispheres 10.0
2428 Male, age 75, right hemisphere 0.0
2535 Female, age 67, right hemisphere 0.0
Lateral amygdala
nTPM: 5.8
2534 Female, age 94, left hemisphere 32.4
1883 Male, age 76, both hemispheres 2.9
2255 Female, age 91, right hemisphere 0.0
2256 Male, age 80, left hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 111.1
1974 Female, age 91, both hemispheres 176.5
2486 Female, age 94, both hemispheres 128.1
2201 Male, age 74, unknown 28.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 125.2
Samples: 152

Max nTPM: 455.6
Min nTPM: 8.9
Std nTPM: 83.4
Median nTPM: 106.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 455.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 408.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 393.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 354.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 342.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 322.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 315.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 312.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 283.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 263.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 263.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 259.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 248.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 245.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 233.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 228.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 222.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 219.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 219.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 218.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 202.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 201.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 198.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 195.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 193.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 192.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 189.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 189.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 189.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 184.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 176.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 175.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 173.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 171.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 165.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 163.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 162.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 161.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 160.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 160.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 156.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 154.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 150.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 149.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 147.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 147.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 145.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 144.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 143.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 142.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 139.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 138.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 136.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 134.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 133.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 133.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 131.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 125.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 125.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 124.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 123.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 122.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 121.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 121.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 121.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 119.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 119.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 113.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 107.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 106.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 105.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 104.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 102.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 101.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 98.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 94.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 92.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 92.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 91.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 90.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 88.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 84.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 84.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 80.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 78.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 77.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 72.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 72.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 71.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 68.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 67.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 66.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 66.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 60.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 59.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 56.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 55.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 55.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 54.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 52.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 52.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 52.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 52.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 52.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 46.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 45.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 45.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 44.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 44.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 44.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 40.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 40.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 29.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 28.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 28.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 26.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 24.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 18.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 607.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 607.5
FF:10151-102I7 76 years, female 607.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 133.8
Pig sample Sample description nTPM
Amygdala
nTPM: 133.8
Samples: 4

Max nTPM: 175.5
Min nTPM: 92.0
Sample A Female 175.5
Sample B Female 92.0
Sample C Male 118.2
Sample D Male 149.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1107.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1107.1
Samples: 4

Max nTPM: 1233.5
Min nTPM: 1020.2
Sample A Male 1233.5
Sample B Male 1077.7
Sample C Female 1020.2
Sample D Female 1097.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 35.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 35.3
68193013 Antisense, RP_040928_01_C01, Mouse strain C57BL/6J (56 days, male) 39.0
70928293 Antisense, RP_050725_02_C08, Mouse strain C57BL/6J (56 days, male) 31.6

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