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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:321.1 nTPM
HPA:321.1 nTPM
GTEx:385.8 nTPM
FANTOM5:633.5 Scaled Tags Per Million
Pig:62.3 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 321.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 316.9
2816 Male, age 47, midline 324.9
2048 Male, age 55, midline 322.3
1981 Female, age 72, midline 317.9
2194 Female, age 79, both hemispheres 312.6
2565 Male, age 75, midline 306.9
Cervical spinal cord, dorsal horn
nTPM: 321.1
2721 Male, age 90, both hemispheres 361.9
2296 Male, age 66, both hemispheres 317.8
2069 Male, age 47, both hemispheres 313.2
2297 Male, age 75, both hemispheres 312.8
2173 Female, age 72, unknown 312.5
1877 Male, age 55, unknown 308.4
Cervical spinal cord, ventral horn
nTPM: 308.7
2098 Female, age 72, unknown 324.9
2068 Male, age 55, unknown 316.3
2295 Male, age 66, both hemispheres 307.3
2480 Male, age 75, both hemispheres 304.0
2820 Female, age 79, both hemispheres 301.4
2809 Male, age 90, both hemispheres 298.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 385.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 385.8
Samples: 159

Max nTPM: 649.2
Min nTPM: 232.3
Std nTPM: 72.4
Median nTPM: 380.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 649.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 648.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 621.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 565.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 552.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 507.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 502.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 499.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 494.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 493.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 492.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 492.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 491.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 486.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 484.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 479.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 478.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 477.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 472.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 470.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 462.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 461.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 456.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 455.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 455.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 453.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 451.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 450.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 447.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 446.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 445.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 442.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 441.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 440.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 437.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 437.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 436.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 434.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 433.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 426.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 422.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 422.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 417.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 417.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 413.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 413.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 412.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 412.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 410.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 409.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 409.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 407.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 405.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 402.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 401.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 400.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 399.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 398.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 397.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 397.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 394.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 394.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 393.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 392.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 392.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 392.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 390.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 388.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 388.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 388.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 387.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 386.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 384.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 384.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 384.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 384.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 383.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 381.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 381.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 380.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 377.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 376.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 376.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 375.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 375.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 374.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 374.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 373.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 372.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 371.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 370.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 369.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 368.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 366.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 366.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 365.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 363.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 361.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 361.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 359.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 357.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 356.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 354.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 354.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 352.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 352.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 350.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 349.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 347.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 346.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 345.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 345.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 345.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 344.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 341.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 341.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 341.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 340.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 339.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 339.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 337.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 333.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 332.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 331.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 329.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 326.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 324.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 323.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 323.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 323.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 322.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 322.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 322.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 321.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 319.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 318.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 318.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 313.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 312.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 311.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 311.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 308.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 308.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 303.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 303.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 300.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 296.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 294.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 287.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 283.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 280.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 274.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 274.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 259.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 255.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 252.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 252.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 252.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 232.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 633.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 633.5
FF:10159-103A6 76 years, female 644.0
FF:10181-103D1 60 years, female 623.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.9
Samples: 4

Max nTPM: 56.6
Min nTPM: 45.8
Sample A Female 56.6
Sample B Female 49.9
Sample C Male 45.8
Sample D Male 51.4
Ventral spinal cord
nTPM: 62.3
Samples: 4

Max nTPM: 68.9
Min nTPM: 59.9
Sample A Female 68.9
Sample B Female 59.9
Sample C Male 60.3
Sample D Male 60.0

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