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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:330.1 nTPM
HPA:330.1 nTPM
GTEx:411.8 nTPM
FANTOM5:521.8 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:221.5 nTPM
Allen mouse:6.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 330.1
Sample id Sample description nTPM
Amygdala
nTPM: 321.6
2514 Male, age 75, right hemisphere 341.6
1987 Female, age 91, left hemisphere 322.6
2814 Male, age 76, right hemisphere 319.0
2695 Female, age 67, right hemisphere 315.7
2517 Female, age 94, left hemisphere 308.9
Basal amygdala
nTPM: 311.9
2243 Female, age 91, right hemisphere 345.7
2609 Male, age 75, right hemisphere 321.4
1955 Male, age 76, both hemispheres 320.6
2685 Female, age 94, left hemisphere 298.6
2110 Male, age 80, left hemisphere 295.7
2827 Female, age 67, right hemisphere 289.5
Central amygdala
nTPM: 312.4
2701 Female, age 91, right hemisphere 329.2
1905 Male, age 76, both hemispheres 313.2
2239 Male, age 80, left hemisphere 312.6
2515 Male, age 75, right hemisphere 311.2
2826 Female, age 94, left hemisphere 295.6
Corticomedial amygdala
nTPM: 330.1
2240 Male, age 76, both hemispheres 359.5
2242 Female, age 91, right hemisphere 355.6
2429 Female, age 94, left hemisphere 326.8
2428 Male, age 75, right hemisphere 322.1
2535 Female, age 67, right hemisphere 320.6
2829 Male, age 80, left hemisphere 295.9
Lateral amygdala
nTPM: 302.0
2534 Female, age 94, left hemisphere 312.4
2516 Male, age 75, right hemisphere 308.6
2255 Female, age 91, right hemisphere 307.4
1883 Male, age 76, both hemispheres 306.9
2256 Male, age 80, left hemisphere 297.4
2830 Female, age 67, right hemisphere 279.5
Stria terminalis, bed nucleus
nTPM: 312.5
2486 Female, age 94, both hemispheres 318.8
1974 Female, age 91, both hemispheres 311.2
2201 Male, age 74, unknown 307.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 411.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 411.8
Samples: 152

Max nTPM: 968.1
Min nTPM: 263.2
Std nTPM: 116.8
Median nTPM: 382.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 968.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 892.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 786.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 779.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 748.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 689.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 682.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 670.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 658.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 646.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 643.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 633.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 603.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 597.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 555.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 544.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 530.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 525.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 512.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 505.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 488.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 485.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 483.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 481.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 470.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 466.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 466.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 460.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 458.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 457.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 453.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 452.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 450.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 447.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 446.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 446.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 439.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 438.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 437.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 435.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 434.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 433.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 432.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 431.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 431.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 428.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 428.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 425.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 421.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 419.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 418.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 417.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 414.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 412.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 410.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 407.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 406.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 403.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 402.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 400.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 396.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 396.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 395.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 394.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 394.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 394.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 393.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 391.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 389.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 389.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 388.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 387.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 386.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 386.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 385.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 382.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 382.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 380.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 379.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 378.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 377.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 377.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 376.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 376.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 376.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 375.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 373.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 373.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 371.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 371.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 370.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 370.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 368.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 367.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 365.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 364.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 361.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 359.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 357.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 357.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 356.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 356.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 356.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 355.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 351.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 349.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 348.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 347.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 347.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 346.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 345.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 344.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 341.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 341.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 341.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 340.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 340.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 338.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 334.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 332.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 332.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 332.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 328.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 327.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 326.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 323.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 323.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 322.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 322.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 317.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 316.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 316.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 315.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 310.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 310.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 308.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 308.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 307.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 307.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 306.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 305.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 303.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 297.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 296.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 289.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 289.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 284.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 283.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 275.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 271.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 271.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 263.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 521.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 521.8
FF:10151-102I7 76 years, female 521.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.2
Pig sample Sample description nTPM
Amygdala
nTPM: 40.3
Samples: 4

Max nTPM: 48.5
Min nTPM: 34.1
Sample A Female 48.5
Sample B Female 40.8
Sample C Male 37.6
Sample D Male 34.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 221.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 221.5
Samples: 4

Max nTPM: 231.4
Min nTPM: 209.9
Sample A Male 226.6
Sample B Male 231.4
Sample C Female 218.2
Sample D Female 209.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.1
74750021 Antisense, RP_060220_05_E11, Mouse strain C57BL/6J (56 days, male) 6.3
70439183 Antisense, RP_050614_03_D02, Mouse strain C57BL/6J (56 days, male) 5.9

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