MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:402.7 nTPM
HPA:402.7 nTPM
GTEx:450.1 nTPM
FANTOM5:455.7 Scaled Tags Per Million
Pig:61.4 nTPM
Mouse:203.0 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 402.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 304.2
2219 Male, age 76, both hemispheres 332.8
1870 Female, age 42, unknown 316.5
1833 Male, age 53, unknown 309.5
2019 Male, age 18, unknown 302.1
1827 Male, age 72, unknown 301.9
1830 Male, age 51, unknown 300.6
2666 Male, age 74, left hemisphere 299.7
2828 Female, age 72, unknown 297.8
2411 Female, age 72, unknown 297.0
2586 Male, age 75, left hemisphere 284.0
Dorsal raphe nucleus
nTPM: 316.3
2750 Male, age 76, both hemispheres 332.8
2047 Male, age 72, unknown 318.5
2298 Female, age 72, unknown 313.3
1828 Male, age 53, unknown 309.7
2016 Female, age 72, unknown 307.3
Inferior colliculus
nTPM: 311.1
2849 Male, age 72, unknown 323.4
1890 Male, age 53, unknown 310.0
1848 Female, age 42, unknown 308.5
2097 Female, age 72, unknown 302.6
Median raphe nucleus
nTPM: 402.7
2220 Male, age 76, midline 402.7
Pedunculopontine tegmental nucleus
nTPM: 344.1
2338 Male, age 61, both hemispheres 377.6
2334 Male, age 80, both hemispheres 336.3
1921 Female, age 85, both hemispheres 318.5
Periaquaductal grey, anterior
nTPM: 309.2
2502 Female, age 75, unknown 311.3
1947 Male, age 18, unknown 310.8
1795 Male, age 51, unknown 305.5
Periaquaductal grey, dorsal
nTPM: 316.0
2850 Male, age 76, both hemispheres 363.9
1840 Male, age 53, unknown 304.5
1831 Male, age 72, unknown 301.3
2464 Female, age 72, unknown 294.3
Periaquaductal grey, lateral
nTPM: 314.5
2140 Male, age 76, both hemispheres 330.4
2272 Male, age 74, both hemispheres 308.3
2053 Male, age 18, unknown 304.6
Pretectal area
nTPM: 316.1
2667 Female, age 75, unknown 335.7
2407 Male, age 75, both hemispheres 319.9
2273 Male, age 74, both hemispheres 319.7
1816 Male, age 51, unknown 316.7
1817 Female, age 42, unknown 316.6
2224 Female, age 72, unknown 315.0
1815 Male, age 53, unknown 314.9
1944 Female, age 72, unknown 312.6
2316 Male, age 76, right hemisphere 309.9
2825 Male, age 18, unknown 309.3
2007 Male, age 72, unknown 306.7
Red nucleus
nTPM: 312.7
1821 Female, age 72, unknown 329.0
1865 Male, age 51, unknown 326.8
1954 Female, age 42, unknown 322.3
2725 Female, age 75, unknown 319.4
2503 Female, age 72, unknown 318.6
1904 Male, age 53, unknown 318.4
2823 Male, age 76, right hemisphere 315.6
2227 Male, age 72, unknown 310.2
2769 Male, age 72, unknown 308.0
2785 Male, age 18, unknown 307.6
2584 Male, age 75, left hemisphere 289.1
2588 Male, age 74, left hemisphere 287.5
Substantia nigra
nTPM: 321.3
2699 Male, age 18, unknown 351.7
1916 Female, age 42, unknown 345.8
2241 Male, age 72, unknown 342.4
1851 Male, age 51, unknown 325.0
1941 Male, age 53, unknown 321.6
1889 Female, age 72, unknown 318.2
2409 Female, age 72, unknown 315.2
2665 Male, age 74, both hemispheres 305.2
2590 Female, age 75, unknown 298.1
2583 Male, age 75, right hemisphere 290.2
Superior colliculus
nTPM: 306.0
1895 Male, age 76, right hemisphere 315.8
1796 Male, age 53, unknown 312.9
2587 Male, age 74, left hemisphere 312.0
1913 Female, age 42, unknown 311.9
2087 Female, age 72, unknown 305.5
2668 Female, age 75, unknown 301.9
1839 Male, age 51, unknown 300.9
2261 Male, age 18, unknown 300.7
1995 Male, age 72, unknown 299.4
2664 Male, age 75, both hemispheres 299.4
Ventral tegmental area
nTPM: 324.8
2218 Male, age 76, both hemispheres 349.6
2223 Female, age 72, unknown 335.7
1915 Female, age 42, unknown 332.8
1942 Male, age 51, unknown 313.7
2021 Male, age 53, unknown 312.0
2410 Female, age 72, unknown 305.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 450.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 450.1
Samples: 139

Max nTPM: 1314.4
Min nTPM: 264.0
Std nTPM: 114.2
Median nTPM: 436.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1314.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 933.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 629.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 627.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 624.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 624.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 622.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 609.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 595.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 592.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 591.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 455.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 455.7
FF:10158-103A5 76 years, female 455.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.4
Pig sample Sample description nTPM
Midbrain
nTPM: 59.5
Samples: 4

Max nTPM: 67.2
Min nTPM: 53.7
Sample A Female 67.2
Sample B Female 60.7
Sample C Male 53.7
Sample D Male 56.3
Periaqueductal gray
nTPM: 53.0
Samples: 3

Max nTPM: 55.9
Min nTPM: 49.5
Sample B Female 53.7
Sample C Male 55.9
Sample D Male 49.5
Substantia nigra
nTPM: 58.1
Samples: 4

Max nTPM: 78.8
Min nTPM: 45.6
Sample A Female 78.8
Sample B Female 45.6
Sample C Male 60.0
Sample D Male 47.9
Superior colliculi
nTPM: 61.4
Samples: 4

Max nTPM: 78.4
Min nTPM: 44.1
Sample A Female 78.4
Sample B Female 44.1
Sample C Male 64.8
Sample D Male 58.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 203.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 203.0
Samples: 4

Max nTPM: 219.8
Min nTPM: 192.1
Sample A Male 219.8
Sample B Male 192.1
Sample C Female 196.2
Sample D Female 203.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
74750021 Antisense, RP_060220_05_E11, Mouse strain C57BL/6J (56 days, male) 4.1
70439183 Antisense, RP_050614_03_D02, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.