MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.5 nTPM
HPA:56.5 nTPM
GTEx:57.5 nTPM
FANTOM5:84.8 Scaled Tags Per Million
Pig:62.4 nTPM
Mouse:129.6 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.3
2666 Male, age 74, left hemisphere 58.7
1870 Female, age 42, unknown 54.4
2019 Male, age 18, unknown 54.2
1833 Male, age 53, unknown 51.9
1830 Male, age 51, unknown 50.1
2828 Female, age 72, unknown 48.2
1827 Male, age 72, unknown 47.3
2411 Female, age 72, unknown 43.8
2586 Male, age 75, left hemisphere 42.9
2219 Male, age 76, both hemispheres 41.7
Dorsal raphe nucleus
nTPM: 45.5
2016 Female, age 72, unknown 49.9
1828 Male, age 53, unknown 46.9
2298 Female, age 72, unknown 45.2
2750 Male, age 76, both hemispheres 44.4
2047 Male, age 72, unknown 41.1
Inferior colliculus
nTPM: 49.9
1890 Male, age 53, unknown 51.6
2097 Female, age 72, unknown 50.7
1848 Female, age 42, unknown 49.8
2849 Male, age 72, unknown 47.5
Median raphe nucleus
nTPM: 40.3
2220 Male, age 76, midline 40.3
Pedunculopontine tegmental nucleus
nTPM: 43.9
2334 Male, age 80, both hemispheres 45.8
1921 Female, age 85, both hemispheres 45.5
2338 Male, age 61, both hemispheres 40.3
Periaquaductal grey, anterior
nTPM: 46.3
2502 Female, age 75, unknown 49.4
1947 Male, age 18, unknown 45.4
1795 Male, age 51, unknown 43.9
Periaquaductal grey, dorsal
nTPM: 44.7
2850 Male, age 76, both hemispheres 49.5
1831 Male, age 72, unknown 49.1
1840 Male, age 53, unknown 40.4
2464 Female, age 72, unknown 39.9
Periaquaductal grey, lateral
nTPM: 46.6
2053 Male, age 18, unknown 51.3
2272 Male, age 74, both hemispheres 47.1
2140 Male, age 76, both hemispheres 41.5
Pretectal area
nTPM: 49.5
2007 Male, age 72, unknown 54.9
1815 Male, age 53, unknown 54.8
1816 Male, age 51, unknown 54.1
1817 Female, age 42, unknown 53.5
1944 Female, age 72, unknown 51.6
2407 Male, age 75, both hemispheres 51.5
2224 Female, age 72, unknown 48.3
2273 Male, age 74, both hemispheres 48.1
2825 Male, age 18, unknown 43.5
2316 Male, age 76, right hemisphere 42.5
2667 Female, age 75, unknown 42.2
Red nucleus
nTPM: 56.5
1821 Female, age 72, unknown 64.2
1904 Male, age 53, unknown 63.4
1865 Male, age 51, unknown 59.0
2588 Male, age 74, left hemisphere 58.8
2725 Female, age 75, unknown 58.3
1954 Female, age 42, unknown 57.4
2785 Male, age 18, unknown 56.4
2503 Female, age 72, unknown 55.1
2227 Male, age 72, unknown 53.7
2769 Male, age 72, unknown 52.4
2584 Male, age 75, left hemisphere 49.9
2823 Male, age 76, right hemisphere 49.2
Substantia nigra
nTPM: 48.7
2590 Female, age 75, unknown 56.6
1889 Female, age 72, unknown 55.5
2409 Female, age 72, unknown 54.0
2665 Male, age 74, both hemispheres 51.7
2583 Male, age 75, right hemisphere 48.8
2699 Male, age 18, unknown 46.9
1851 Male, age 51, unknown 46.2
2241 Male, age 72, unknown 45.2
1941 Male, age 53, unknown 42.2
1916 Female, age 42, unknown 40.3
Superior colliculus
nTPM: 51.1
2587 Male, age 74, left hemisphere 61.7
1995 Male, age 72, unknown 59.4
1913 Female, age 42, unknown 57.4
1839 Male, age 51, unknown 51.1
2087 Female, age 72, unknown 48.9
2261 Male, age 18, unknown 48.9
1796 Male, age 53, unknown 47.2
2668 Female, age 75, unknown 46.0
1895 Male, age 76, right hemisphere 45.5
2664 Male, age 75, both hemispheres 44.5
Ventral tegmental area
nTPM: 46.8
2410 Female, age 72, unknown 53.4
2223 Female, age 72, unknown 50.3
2021 Male, age 53, unknown 45.5
2218 Male, age 76, both hemispheres 44.7
1915 Female, age 42, unknown 43.6
1942 Male, age 51, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.5
Samples: 139

Max nTPM: 121.4
Min nTPM: 20.9
Std nTPM: 18.9
Median nTPM: 55.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 121.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 121.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 98.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 98.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 97.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 93.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 93.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 92.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 92.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 89.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.8
FF:10158-103A5 76 years, female 84.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.4
Pig sample Sample description nTPM
Midbrain
nTPM: 62.4
Samples: 4

Max nTPM: 83.9
Min nTPM: 54.6
Sample A Female 83.9
Sample B Female 55.1
Sample C Male 55.8
Sample D Male 54.6
Periaqueductal gray
nTPM: 44.7
Samples: 3

Max nTPM: 48.2
Min nTPM: 41.3
Sample B Female 48.2
Sample C Male 44.5
Sample D Male 41.3
Substantia nigra
nTPM: 48.3
Samples: 4

Max nTPM: 53.6
Min nTPM: 39.8
Sample A Female 53.6
Sample B Female 48.3
Sample C Male 39.8
Sample D Male 51.5
Superior colliculi
nTPM: 59.1
Samples: 4

Max nTPM: 70.4
Min nTPM: 46.0
Sample A Female 70.4
Sample B Female 46.0
Sample C Male 63.1
Sample D Male 56.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.6
Samples: 4

Max nTPM: 137.4
Min nTPM: 120.9
Sample A Male 123.9
Sample B Male 120.9
Sample C Female 137.4
Sample D Female 136.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
95 Antisense, RP_Baylor_253873, Mouse strain C57BL/6J (56 days, male) 1.0
94 Antisense, RP_Baylor_253873, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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