MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:267.7 nTPM
HPA:267.7 nTPM
GTEx:291.5 nTPM
FANTOM5:226.0 Scaled Tags Per Million
Pig:222.6 nTPM
Mouse:482.2 nTPM
Allen mouse:21.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 267.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 245.8
2586 Male, age 75, left hemisphere 269.9
2666 Male, age 74, left hemisphere 257.4
1827 Male, age 72, unknown 252.5
2411 Female, age 72, unknown 251.3
2828 Female, age 72, unknown 251.0
1870 Female, age 42, unknown 247.9
2019 Male, age 18, unknown 237.3
1833 Male, age 53, unknown 236.9
1830 Male, age 51, unknown 230.2
2219 Male, age 76, both hemispheres 224.0
Dorsal raphe nucleus
nTPM: 267.7
2298 Female, age 72, unknown 291.0
2016 Female, age 72, unknown 269.2
2047 Male, age 72, unknown 268.1
1828 Male, age 53, unknown 267.6
2750 Male, age 76, both hemispheres 242.5
Inferior colliculus
nTPM: 258.2
2097 Female, age 72, unknown 272.4
1890 Male, age 53, unknown 258.7
1848 Female, age 42, unknown 256.1
2849 Male, age 72, unknown 245.5
Median raphe nucleus
nTPM: 252.6
2220 Male, age 76, midline 252.6
Pedunculopontine tegmental nucleus
nTPM: 236.3
2334 Male, age 80, both hemispheres 245.5
1921 Female, age 85, both hemispheres 243.3
2338 Male, age 61, both hemispheres 220.1
Periaquaductal grey, anterior
nTPM: 254.8
1947 Male, age 18, unknown 262.1
1795 Male, age 51, unknown 258.3
2502 Female, age 75, unknown 244.1
Periaquaductal grey, dorsal
nTPM: 265.4
2850 Male, age 76, both hemispheres 282.4
1840 Male, age 53, unknown 271.6
1831 Male, age 72, unknown 255.5
2464 Female, age 72, unknown 252.1
Periaquaductal grey, lateral
nTPM: 258.4
2140 Male, age 76, both hemispheres 264.1
2053 Male, age 18, unknown 260.3
2272 Male, age 74, both hemispheres 250.8
Pretectal area
nTPM: 254.7
1817 Female, age 42, unknown 270.8
2224 Female, age 72, unknown 266.6
2273 Male, age 74, both hemispheres 263.5
2667 Female, age 75, unknown 263.2
1816 Male, age 51, unknown 261.0
1815 Male, age 53, unknown 256.4
1944 Female, age 72, unknown 255.1
2825 Male, age 18, unknown 251.1
2007 Male, age 72, unknown 250.6
2316 Male, age 76, right hemisphere 233.3
2407 Male, age 75, both hemispheres 230.4
Red nucleus
nTPM: 248.3
1821 Female, age 72, unknown 273.3
1954 Female, age 42, unknown 260.7
2503 Female, age 72, unknown 259.7
2725 Female, age 75, unknown 259.3
1904 Male, age 53, unknown 251.4
2227 Male, age 72, unknown 248.0
2769 Male, age 72, unknown 247.0
2823 Male, age 76, right hemisphere 246.5
1865 Male, age 51, unknown 244.3
2785 Male, age 18, unknown 236.2
2588 Male, age 74, left hemisphere 234.3
2584 Male, age 75, left hemisphere 218.6
Substantia nigra
nTPM: 253.9
1916 Female, age 42, unknown 266.8
1851 Male, age 51, unknown 265.0
2699 Male, age 18, unknown 264.5
2241 Male, age 72, unknown 259.6
1889 Female, age 72, unknown 258.0
2583 Male, age 75, right hemisphere 252.6
1941 Male, age 53, unknown 245.5
2409 Female, age 72, unknown 244.0
2590 Female, age 75, unknown 242.2
2665 Male, age 74, both hemispheres 240.6
Superior colliculus
nTPM: 248.5
2087 Female, age 72, unknown 258.1
1995 Male, age 72, unknown 257.3
1796 Male, age 53, unknown 254.8
2261 Male, age 18, unknown 252.6
2668 Female, age 75, unknown 250.2
2664 Male, age 75, both hemispheres 247.2
2587 Male, age 74, left hemisphere 246.5
1839 Male, age 51, unknown 242.7
1913 Female, age 42, unknown 241.2
1895 Male, age 76, right hemisphere 234.3
Ventral tegmental area
nTPM: 256.8
2410 Female, age 72, unknown 268.3
1942 Male, age 51, unknown 261.9
1915 Female, age 42, unknown 257.4
2218 Male, age 76, both hemispheres 253.6
2021 Male, age 53, unknown 252.9
2223 Female, age 72, unknown 246.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 291.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 291.5
Samples: 139

Max nTPM: 615.8
Min nTPM: 126.1
Std nTPM: 90.1
Median nTPM: 278.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 615.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 593.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 587.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 557.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 554.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 500.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 480.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 440.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 435.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 428.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 422.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 226.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 226.0
FF:10158-103A5 76 years, female 226.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 222.6
Pig sample Sample description nTPM
Midbrain
nTPM: 205.4
Samples: 4

Max nTPM: 262.4
Min nTPM: 170.1
Sample A Female 198.6
Sample B Female 170.1
Sample C Male 262.4
Sample D Male 190.4
Periaqueductal gray
nTPM: 162.5
Samples: 3

Max nTPM: 184.9
Min nTPM: 142.5
Sample B Female 160.0
Sample C Male 184.9
Sample D Male 142.5
Substantia nigra
nTPM: 188.9
Samples: 4

Max nTPM: 247.8
Min nTPM: 134.2
Sample A Female 247.8
Sample B Female 172.1
Sample C Male 201.3
Sample D Male 134.2
Superior colliculi
nTPM: 222.6
Samples: 4

Max nTPM: 260.3
Min nTPM: 190.2
Sample A Female 228.2
Sample B Female 211.6
Sample C Male 260.3
Sample D Male 190.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 482.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 482.3
Samples: 4

Max nTPM: 494.6
Min nTPM: 467.8
Sample A Male 490.3
Sample B Male 467.8
Sample C Female 476.3
Sample D Female 494.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
71489783 Antisense, RP_050512_04_E11, Mouse strain C57BL/6J (56 days, male) 21.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.