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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:266.7 nTPM
HPA:266.7 nTPM
GTEx:211.6 nTPM
FANTOM5:268.9 Scaled Tags Per Million
Pig:192.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 266.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 257.0
1981 Female, age 72, midline 286.6
2048 Male, age 55, midline 266.6
2565 Male, age 75, midline 264.1
2816 Male, age 47, midline 235.2
2194 Female, age 79, both hemispheres 232.8
Cervical spinal cord, dorsal horn
nTPM: 266.7
2173 Female, age 72, unknown 302.2
2296 Male, age 66, both hemispheres 281.5
2069 Male, age 47, both hemispheres 276.8
2721 Male, age 90, both hemispheres 262.1
1877 Male, age 55, unknown 241.4
2297 Male, age 75, both hemispheres 236.3
Cervical spinal cord, ventral horn
nTPM: 256.4
2098 Female, age 72, unknown 304.2
2295 Male, age 66, both hemispheres 271.2
2809 Male, age 90, both hemispheres 270.1
2480 Male, age 75, both hemispheres 245.6
2068 Male, age 55, unknown 227.8
2820 Female, age 79, both hemispheres 219.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 211.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 211.6
Samples: 159

Max nTPM: 475.1
Min nTPM: 124.8
Std nTPM: 51.4
Median nTPM: 202.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 475.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 359.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 349.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 333.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 324.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 322.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 316.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 312.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 309.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 304.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 295.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 295.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 293.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 277.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 270.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 268.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 268.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 266.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 264.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 264.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 263.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 263.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 262.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 259.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 257.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 256.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 255.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 254.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 252.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 251.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 249.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 247.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 244.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 244.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 244.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 244.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 243.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 243.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 241.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 241.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 239.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 239.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 238.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 238.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 237.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 235.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 233.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 233.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 231.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 231.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 224.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 223.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 223.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 222.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 221.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 221.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 218.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 217.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 216.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 216.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 214.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 214.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 214.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 213.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 212.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 211.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 211.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 210.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 210.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 210.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 209.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 207.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 207.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 205.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 205.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 204.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 204.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 204.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 203.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 202.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 202.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 200.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 199.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 199.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 199.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 199.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 198.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 197.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 196.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 196.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 195.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 195.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 195.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 194.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 193.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 193.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 192.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 192.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 191.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 190.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 190.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 190.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 189.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 189.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 189.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 188.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 187.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 187.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 186.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 184.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 184.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 183.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 182.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 182.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 182.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 181.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 181.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 180.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 179.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 177.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 177.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 176.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 176.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 176.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 175.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 174.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 173.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 170.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 170.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 169.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 164.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 163.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 162.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 162.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 161.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 161.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 160.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 158.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 157.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 157.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 156.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 156.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 154.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 153.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 152.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 151.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 145.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 143.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 141.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 139.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 138.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 136.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 136.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 134.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 133.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 125.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 124.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 268.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 268.9
FF:10159-103A6 76 years, female 278.1
FF:10181-103D1 60 years, female 259.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 192.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 192.2
Samples: 4

Max nTPM: 227.1
Min nTPM: 172.2
Sample A Female 172.2
Sample B Female 186.8
Sample C Male 227.1
Sample D Male 182.7
Ventral spinal cord
nTPM: 187.7
Samples: 4

Max nTPM: 201.2
Min nTPM: 175.0
Sample A Female 182.8
Sample B Female 191.8
Sample C Male 201.2
Sample D Male 175.0

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