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RLBP1
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  • RLBP1
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Medium
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Medium
Outer plexiform layer: Not detected
Photoreceptor cells: Low
Pigment epithelial cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:265.6 nTPM
GTEx:265.6 nTPM
FANTOM5:705.4 Scaled Tags Per Million
Pig:146.0 nTPM
Mouse:737.1 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA042051
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Medium
Inner plexiform layer Medium
Ganglion cells Medium
Nerve fiber layer Medium

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA044083
Pigment epithelial cells Medium
Photoreceptor cells Low
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Medium
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer High

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 265.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 265.6
Samples: 105

Max nTPM: 551.7
Min nTPM: 105.9
Std nTPM: 83.1
Median nTPM:
394_1 75 years, female 551.7
506_1 65 years, male 466.6
4_1 88 years, female 447.3
354_1 81 years, female 436.2
189_1 76 years, male 426.0
452_1 88 years, female 424.6
264_1 73 years, female 410.8
351_1 91 years, male 395.5
406_1 79 years, male 394.3
319_1 81 years, male 382.1
308_1 70 years, female 380.4
177_1 74 years, male 372.6
163_1 78 years, male 365.1
376_1 75 years, female 360.7
349_1 83 years, male 360.1
384_1 83 years, male 350.0
115_1 83 years, male 347.4
246_1 77 years, male 345.4
375_1 74 years, female 342.9
286_1 68 years, female 339.1
350_1 84 years, female 334.9
265_1 87 years, male 333.9
379_1 60 years, male 326.3
355_1 70 years, female 311.5
173_1 67 years, male 308.4
501_1 88 years, male 307.7
137_1 83 years, male 307.3
405_1 91 years, male 307.3
389_1 86 years, female 304.8
109_1 81 years, female 304.2
353_1 82 years, female 297.4
295_1 61 years, female 296.5
356_1 87 years, female 295.9
447_1 81 years, male 295.8
396_1 62 years, male 295.1
120_1 70 years, female 294.0
517_1 88 years, male 292.3
42_1 85 years, male 288.3
386_1 76 years, male 288.3
503_1 68 years, male 284.3
172_1 72 years, female 280.1
126_1 63 years, male 279.1
518_1 75 years, female 277.8
318_1 68 years, male 273.7
119_1 70 years, female 273.0
292_1 71 years, male 271.2
313_1 79 years, female 270.9
352_1 62 years, male 270.4
377_1 82 years, female 267.0
288_1 66 years, female 262.2
314_1 67 years, male 262.2
315_1 62 years, female 260.4
243_1 75 years, male 256.3
324_1 76 years, male 253.9
320_1 89 years, female 252.8
266_1 85 years, male 252.0
413_1 59 years, female 249.9
254_1 77 years, female 249.6
468_1 89 years, male 248.1
404_1 82 years, female 244.3
35_1 74 years, female 240.9
18_1 88 years, male 240.7
17_1 71 years, male 237.4
229_1 69 years, female 236.5
316_1 62 years, male 230.3
6_1 73 years, female 229.1
99_1 64 years, male 229.1
526_1 61 years, male 227.7
425_1 59 years, female 226.9
291_1 76 years, male 223.7
9_1 66 years, female 223.1
153_1 70 years, female 223.0
142_1 61 years, female 222.8
414_1 84 years, female 221.3
217_1 76 years, male 219.0
145_1 84 years, male 215.3
89_1 63 years, male 213.1
149_1 88 years, male 212.3
317_1 60 years, male 211.5
311_1 78 years, male 209.4
348_1 84 years, male 207.5
117_1 61 years, male 207.4
81_1 67 years, male 203.5
480_1 63 years, male 201.7
162_1 79 years, female 201.3
251_1 78 years, male 200.1
335_1 73 years, female 196.7
347_1 72 years, male 184.3
499_1 55 years, female 181.4
237_1 82 years, male 180.5
32_1 67 years, male 176.9
321_1 62 years, female 173.7
293_1 68 years, female 173.5
466_1 57 years, female 170.5
218_1 71 years, female 166.8
41_1 94 years, female 156.9
491_1 89 years, female 155.7
322_1 76 years, male 154.1
2_1 77 years, female 145.9
415_1 77 years, female 139.9
307_1 66 years, female 136.2
139_1 64 years, female 126.4
43_1 64 years, female 117.8
495_1 57 years, female 106.6
490_1 67 years, female 105.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 705.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 705.4
FF:10030-101E3 24-65 years, mixed 705.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 146.0
Pig sample Sample description nTPM
Retina
nTPM: 146.0
Samples: 4

Max nTPM: 174.2
Min nTPM: 115.1
Sample A Female 126.5
Sample B Female 174.2
Sample C Male 168.0
Sample D Male 115.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 737.1
Mouse sample Sample description nTPM
Retina
nTPM: 737.1
Samples: 4

Max nTPM: 828.7
Min nTPM: 659.8
Sample A Male 828.7
Sample B Male 704.4
Sample C Female 755.3
Sample D Female 659.8

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by the Knut & Alice Wallenberg Foundation.