MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:132.0 nTPM
HPA:132.0 nTPM
GTEx:124.2 nTPM
FANTOM5:244.9 Scaled Tags Per Million
Pig:175.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.1
2019 Male, age 18, unknown 131.2
2586 Male, age 75, left hemisphere 125.6
2411 Female, age 72, unknown 119.5
1870 Female, age 42, unknown 115.4
2219 Male, age 76, both hemispheres 113.0
1833 Male, age 53, unknown 112.4
2666 Male, age 74, left hemisphere 112.2
1830 Male, age 51, unknown 111.9
2828 Female, age 72, unknown 111.3
1827 Male, age 72, unknown 108.4
Dorsal raphe nucleus
nTPM: 118.6
2047 Male, age 72, unknown 121.8
1828 Male, age 53, unknown 120.4
2298 Female, age 72, unknown 119.9
2750 Male, age 76, both hemispheres 119.6
2016 Female, age 72, unknown 111.0
Inferior colliculus
nTPM: 116.5
2097 Female, age 72, unknown 122.9
1848 Female, age 42, unknown 118.4
1890 Male, age 53, unknown 117.7
2849 Male, age 72, unknown 106.8
Median raphe nucleus
nTPM: 125.5
2220 Male, age 76, midline 125.5
Pedunculopontine tegmental nucleus
nTPM: 117.6
2334 Male, age 80, both hemispheres 126.8
1921 Female, age 85, both hemispheres 118.4
2338 Male, age 61, both hemispheres 107.5
Periaquaductal grey, anterior
nTPM: 111.2
2502 Female, age 75, unknown 119.1
1947 Male, age 18, unknown 108.8
1795 Male, age 51, unknown 105.8
Periaquaductal grey, dorsal
nTPM: 107.6
2850 Male, age 76, both hemispheres 109.6
2464 Female, age 72, unknown 109.1
1840 Male, age 53, unknown 108.5
1831 Male, age 72, unknown 103.1
Periaquaductal grey, lateral
nTPM: 103.2
2140 Male, age 76, both hemispheres 103.6
2053 Male, age 18, unknown 103.0
2272 Male, age 74, both hemispheres 103.0
Pretectal area
nTPM: 114.3
1817 Female, age 42, unknown 127.1
1944 Female, age 72, unknown 126.4
2007 Male, age 72, unknown 125.5
1816 Male, age 51, unknown 117.7
1815 Male, age 53, unknown 116.4
2667 Female, age 75, unknown 115.5
2407 Male, age 75, both hemispheres 107.7
2224 Female, age 72, unknown 107.6
2825 Male, age 18, unknown 105.9
2273 Male, age 74, both hemispheres 104.3
2316 Male, age 76, right hemisphere 103.0
Red nucleus
nTPM: 119.6
1821 Female, age 72, unknown 139.6
1954 Female, age 42, unknown 128.7
1865 Male, age 51, unknown 122.9
2785 Male, age 18, unknown 122.6
1904 Male, age 53, unknown 121.8
2769 Male, age 72, unknown 121.1
2227 Male, age 72, unknown 120.2
2503 Female, age 72, unknown 115.0
2584 Male, age 75, left hemisphere 113.1
2823 Male, age 76, right hemisphere 110.7
2725 Female, age 75, unknown 110.0
2588 Male, age 74, left hemisphere 109.7
Substantia nigra
nTPM: 132.0
2241 Male, age 72, unknown 154.4
1916 Female, age 42, unknown 151.6
1851 Male, age 51, unknown 139.9
1941 Male, age 53, unknown 139.7
1889 Female, age 72, unknown 132.5
2409 Female, age 72, unknown 131.8
2699 Male, age 18, unknown 127.6
2583 Male, age 75, right hemisphere 119.8
2665 Male, age 74, both hemispheres 112.4
2590 Female, age 75, unknown 110.3
Superior colliculus
nTPM: 112.6
2668 Female, age 75, unknown 131.8
2087 Female, age 72, unknown 119.6
2664 Male, age 75, both hemispheres 114.3
1895 Male, age 76, right hemisphere 110.9
1839 Male, age 51, unknown 110.6
1796 Male, age 53, unknown 109.5
2587 Male, age 74, left hemisphere 109.1
2261 Male, age 18, unknown 109.0
1913 Female, age 42, unknown 107.4
1995 Male, age 72, unknown 103.3
Ventral tegmental area
nTPM: 122.0
2410 Female, age 72, unknown 133.6
1915 Female, age 42, unknown 126.9
2218 Male, age 76, both hemispheres 123.4
2223 Female, age 72, unknown 118.9
1942 Male, age 51, unknown 118.2
2021 Male, age 53, unknown 111.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.2
Samples: 139

Max nTPM: 228.2
Min nTPM: 72.4
Std nTPM: 28.1
Median nTPM: 119.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 225.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 202.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 201.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 197.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 181.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 179.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 175.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 174.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 172.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 164.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 244.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 244.9
FF:10158-103A5 76 years, female 244.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 175.0
Pig sample Sample description nTPM
Midbrain
nTPM: 175.0
Samples: 4

Max nTPM: 203.6
Min nTPM: 153.6
Sample A Female 203.6
Sample B Female 164.1
Sample C Male 178.6
Sample D Male 153.6
Periaqueductal gray
nTPM: 150.9
Samples: 3

Max nTPM: 180.1
Min nTPM: 124.6
Sample B Female 148.1
Sample C Male 180.1
Sample D Male 124.6
Substantia nigra
nTPM: 166.5
Samples: 4

Max nTPM: 227.2
Min nTPM: 114.6
Sample A Female 227.2
Sample B Female 130.7
Sample C Male 193.6
Sample D Male 114.6
Superior colliculi
nTPM: 169.6
Samples: 4

Max nTPM: 201.8
Min nTPM: 119.7
Sample A Female 198.2
Sample B Female 119.7
Sample C Male 201.8
Sample D Male 158.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.