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MAP1LC3B
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:120.5 nTPM
HPA:120.5 nTPM
GTEx:115.6 nTPM
FANTOM5:274.4 Scaled Tags Per Million
Pig:232.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 120.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 116.4
1981 Female, age 72, midline 123.2
2048 Male, age 55, midline 122.4
2194 Female, age 79, both hemispheres 118.1
2816 Male, age 47, midline 109.5
2565 Male, age 75, midline 108.8
Cervical spinal cord, dorsal horn
nTPM: 120.5
2173 Female, age 72, unknown 135.5
2296 Male, age 66, both hemispheres 132.0
2069 Male, age 47, both hemispheres 118.6
2297 Male, age 75, both hemispheres 113.6
1877 Male, age 55, unknown 112.6
2721 Male, age 90, both hemispheres 110.7
Cervical spinal cord, ventral horn
nTPM: 118.6
2480 Male, age 75, both hemispheres 123.6
2098 Female, age 72, unknown 123.3
2295 Male, age 66, both hemispheres 119.6
2068 Male, age 55, unknown 119.5
2820 Female, age 79, both hemispheres 114.0
2809 Male, age 90, both hemispheres 111.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 115.6
Samples: 159

Max nTPM: 172.0
Min nTPM: 73.4
Std nTPM: 18.4
Median nTPM: 114.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 172.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 171.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 161.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 158.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 157.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 152.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 152.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 148.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 147.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 147.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 146.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 142.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 141.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 141.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 140.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 138.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 135.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 135.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 135.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 135.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 133.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 133.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 133.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 133.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 132.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 132.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 131.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 131.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 131.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 130.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 130.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 130.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 129.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 128.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 128.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 127.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 127.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 127.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 126.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 126.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 125.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 125.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 125.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 125.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 125.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 125.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 125.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 124.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 124.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 124.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 123.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 123.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 122.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 122.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 122.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 122.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 121.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 121.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 120.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 120.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 120.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 119.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 119.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 118.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 117.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 117.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 116.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 116.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 115.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 115.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 115.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 114.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 114.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 114.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 114.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 114.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 113.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 113.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 113.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 113.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 112.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 112.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 112.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 111.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 111.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 110.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 110.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 110.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 109.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 109.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 108.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 108.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 108.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 107.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 107.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 107.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 107.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 107.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 106.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 106.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 105.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 105.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 105.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 103.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 103.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 103.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 102.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 102.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 101.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 101.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 101.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 101.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 101.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 100.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 99.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 99.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 99.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 99.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 98.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 98.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 98.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 97.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 97.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 97.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 97.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 96.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 96.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 96.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 95.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 95.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 95.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 94.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 93.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 93.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 92.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 92.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 90.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 89.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 89.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 89.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 88.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 87.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 85.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 84.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 80.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 78.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 73.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 274.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 274.4
FF:10181-103D1 60 years, female 351.2
FF:10159-103A6 76 years, female 197.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 232.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.9
Samples: 4

Max nTPM: 181.8
Min nTPM: 164.1
Sample A Female 164.1
Sample B Female 174.4
Sample C Male 167.3
Sample D Male 181.8
Ventral spinal cord
nTPM: 232.7
Samples: 4

Max nTPM: 269.2
Min nTPM: 203.0
Sample A Female 224.5
Sample B Female 269.2
Sample C Male 233.9
Sample D Male 203.0

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