MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:741.9 nTPM
HPA:741.9 nTPM
GTEx:695.4 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:875.4 nTPM
Mouse:339.8 nTPM
Allen mouse:17.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 741.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 706.9
2586 Male, age 75, left hemisphere 746.9
2666 Male, age 74, left hemisphere 741.3
2828 Female, age 72, unknown 720.5
1870 Female, age 42, unknown 706.0
1830 Male, age 51, unknown 700.7
2411 Female, age 72, unknown 698.8
1833 Male, age 53, unknown 698.4
2019 Male, age 18, unknown 698.4
1827 Male, age 72, unknown 689.7
2219 Male, age 76, both hemispheres 668.2
Dorsal raphe nucleus
nTPM: 695.1
2016 Female, age 72, unknown 710.6
2298 Female, age 72, unknown 696.6
2750 Male, age 76, both hemispheres 695.1
1828 Male, age 53, unknown 688.3
2047 Male, age 72, unknown 684.9
Inferior colliculus
nTPM: 688.8
2849 Male, age 72, unknown 702.5
1848 Female, age 42, unknown 690.8
1890 Male, age 53, unknown 690.3
2097 Female, age 72, unknown 671.5
Median raphe nucleus
nTPM: 694.3
2220 Male, age 76, midline 694.3
Pedunculopontine tegmental nucleus
nTPM: 741.9
2338 Male, age 61, both hemispheres 852.0
2334 Male, age 80, both hemispheres 716.3
1921 Female, age 85, both hemispheres 657.4
Periaquaductal grey, anterior
nTPM: 696.7
2502 Female, age 75, unknown 716.4
1795 Male, age 51, unknown 695.8
1947 Male, age 18, unknown 677.8
Periaquaductal grey, dorsal
nTPM: 692.3
2850 Male, age 76, both hemispheres 706.6
1840 Male, age 53, unknown 690.8
1831 Male, age 72, unknown 689.1
2464 Female, age 72, unknown 682.4
Periaquaductal grey, lateral
nTPM: 687.4
2272 Male, age 74, both hemispheres 694.2
2053 Male, age 18, unknown 690.6
2140 Male, age 76, both hemispheres 677.5
Pretectal area
nTPM: 688.0
1817 Female, age 42, unknown 705.7
2407 Male, age 75, both hemispheres 701.1
1815 Male, age 53, unknown 697.8
2007 Male, age 72, unknown 697.4
2825 Male, age 18, unknown 693.4
2316 Male, age 76, right hemisphere 691.7
2273 Male, age 74, both hemispheres 683.4
1816 Male, age 51, unknown 682.0
2224 Female, age 72, unknown 678.3
1944 Female, age 72, unknown 670.4
2667 Female, age 75, unknown 666.5
Red nucleus
nTPM: 709.4
2584 Male, age 75, left hemisphere 737.9
2503 Female, age 72, unknown 730.7
1865 Male, age 51, unknown 729.0
1904 Male, age 53, unknown 725.4
2769 Male, age 72, unknown 710.2
2227 Male, age 72, unknown 710.0
1821 Female, age 72, unknown 707.7
2725 Female, age 75, unknown 700.9
2785 Male, age 18, unknown 699.8
1954 Female, age 42, unknown 694.5
2823 Male, age 76, right hemisphere 684.8
2588 Male, age 74, left hemisphere 681.5
Substantia nigra
nTPM: 718.7
2699 Male, age 18, unknown 783.5
2665 Male, age 74, both hemispheres 762.4
1851 Male, age 51, unknown 748.4
2590 Female, age 75, unknown 727.7
2583 Male, age 75, right hemisphere 715.8
1916 Female, age 42, unknown 714.0
2409 Female, age 72, unknown 691.0
1889 Female, age 72, unknown 685.3
1941 Male, age 53, unknown 685.1
2241 Male, age 72, unknown 673.6
Superior colliculus
nTPM: 708.2
1995 Male, age 72, unknown 759.2
1913 Female, age 42, unknown 739.2
2664 Male, age 75, both hemispheres 735.4
2587 Male, age 74, left hemisphere 721.8
1796 Male, age 53, unknown 717.6
2668 Female, age 75, unknown 706.8
1839 Male, age 51, unknown 693.4
2261 Male, age 18, unknown 678.8
2087 Female, age 72, unknown 669.0
1895 Male, age 76, right hemisphere 660.5
Ventral tegmental area
nTPM: 716.9
1915 Female, age 42, unknown 735.5
2223 Female, age 72, unknown 735.0
2021 Male, age 53, unknown 723.4
2410 Female, age 72, unknown 711.9
2218 Male, age 76, both hemispheres 703.0
1942 Male, age 51, unknown 692.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 695.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 695.4
Samples: 139

Max nTPM: 1853.5
Min nTPM: 268.7
Std nTPM: 261.5
Median nTPM: 654.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1853.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1694.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1430.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1303.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1272.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1154.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1152.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1129.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1125.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1092.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1090.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 875.4
Pig sample Sample description nTPM
Midbrain
nTPM: 730.7
Samples: 4

Max nTPM: 1028.5
Min nTPM: 545.3
Sample A Female 1028.5
Sample B Female 770.9
Sample C Male 578.2
Sample D Male 545.3
Periaqueductal gray
nTPM: 563.9
Samples: 3

Max nTPM: 596.1
Min nTPM: 507.7
Sample B Female 587.9
Sample C Male 596.1
Sample D Male 507.7
Substantia nigra
nTPM: 875.4
Samples: 4

Max nTPM: 1061.1
Min nTPM: 767.2
Sample A Female 1061.1
Sample B Female 863.9
Sample C Male 809.5
Sample D Male 767.2
Superior colliculi
nTPM: 730.7
Samples: 4

Max nTPM: 929.0
Min nTPM: 612.0
Sample A Female 929.0
Sample B Female 757.2
Sample C Male 612.0
Sample D Male 624.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 339.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 339.8
Samples: 4

Max nTPM: 379.5
Min nTPM: 305.2
Sample A Male 379.5
Sample B Male 328.0
Sample C Female 305.2
Sample D Female 346.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
100146146 Antisense, RP_110623_01_A03, Mouse strain C57BL/6J (56 days, male) 17.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.