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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:143.8 nTPM
HPA:143.8 nTPM
GTEx:196.6 nTPM
FANTOM5:185.0 Scaled Tags Per Million
Pig:76.6 nTPM
Mouse:270.3 nTPM
Allen mouse:19.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 143.8
Sample id Sample description nTPM
Amygdala
nTPM: 143.8
2814 Male, age 76, right hemisphere 151.6
2695 Female, age 67, right hemisphere 145.1
2514 Male, age 75, right hemisphere 142.8
2517 Female, age 94, left hemisphere 140.3
1987 Female, age 91, left hemisphere 139.1
Basal amygdala
nTPM: 135.9
2609 Male, age 75, right hemisphere 142.3
2243 Female, age 91, right hemisphere 139.3
1955 Male, age 76, both hemispheres 137.8
2110 Male, age 80, left hemisphere 135.7
2685 Female, age 94, left hemisphere 134.4
2827 Female, age 67, right hemisphere 125.8
Central amygdala
nTPM: 137.0
1905 Male, age 76, both hemispheres 145.2
2826 Female, age 94, left hemisphere 144.3
2515 Male, age 75, right hemisphere 134.0
2239 Male, age 80, left hemisphere 133.6
2701 Female, age 91, right hemisphere 127.9
Corticomedial amygdala
nTPM: 136.4
2829 Male, age 80, left hemisphere 141.6
2242 Female, age 91, right hemisphere 140.1
2429 Female, age 94, left hemisphere 137.0
2240 Male, age 76, both hemispheres 135.3
2428 Male, age 75, right hemisphere 134.9
2535 Female, age 67, right hemisphere 129.4
Lateral amygdala
nTPM: 135.8
1883 Male, age 76, both hemispheres 146.7
2516 Male, age 75, right hemisphere 142.8
2534 Female, age 94, left hemisphere 140.1
2255 Female, age 91, right hemisphere 129.4
2256 Male, age 80, left hemisphere 127.8
2830 Female, age 67, right hemisphere 127.8
Stria terminalis, bed nucleus
nTPM: 136.8
1974 Female, age 91, both hemispheres 146.6
2486 Female, age 94, both hemispheres 132.8
2201 Male, age 74, unknown 130.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 196.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 196.6
Samples: 152

Max nTPM: 553.8
Min nTPM: 68.7
Std nTPM: 64.4
Median nTPM: 185.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 553.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 522.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 411.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 371.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 346.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 338.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 312.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 296.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 285.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 283.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 280.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 277.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 273.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 265.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 264.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 252.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 251.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 250.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 248.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 243.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 240.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 240.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 236.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 235.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 235.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 232.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 231.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 229.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 228.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 222.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 222.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 222.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 220.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 218.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 218.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 217.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 217.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 216.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 216.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 216.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 215.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 214.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 214.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 214.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 214.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 214.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 210.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 209.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 208.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 208.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 207.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 203.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 203.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 203.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 202.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 202.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 200.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 199.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 198.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 198.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 198.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 198.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 197.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 197.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 196.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 195.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 193.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 192.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 191.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 190.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 188.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 187.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 186.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 186.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 185.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 185.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 185.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 185.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 183.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 183.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 182.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 182.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 182.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 182.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 182.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 179.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 179.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 179.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 177.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 177.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 176.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 175.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 173.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 173.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 172.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 171.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 170.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 168.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 168.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 168.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 166.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 165.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 163.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 163.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 162.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 161.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 161.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 161.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 159.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 159.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 158.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 153.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 153.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 152.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 152.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 151.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 150.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 148.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 148.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 147.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 147.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 147.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 145.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 144.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 144.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 143.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 140.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 139.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 137.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 136.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 134.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 133.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 133.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 127.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 124.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 124.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 123.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 119.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 118.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 116.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 110.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 107.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 68.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 185.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.0
FF:10151-102I7 76 years, female 185.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.6
Pig sample Sample description nTPM
Amygdala
nTPM: 76.6
Samples: 4

Max nTPM: 110.1
Min nTPM: 61.3
Sample A Female 110.1
Sample B Female 70.1
Sample C Male 61.3
Sample D Male 64.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 270.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 270.3
Samples: 4

Max nTPM: 287.8
Min nTPM: 255.4
Sample A Male 272.8
Sample B Male 255.4
Sample C Female 287.8
Sample D Female 265.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.2
71608213 Antisense, RP_050927_01_B09, Mouse strain C57BL/6J (56 days, male) 19.2

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