MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:144.8 nTPM
HPA:144.8 nTPM
GTEx:190.5 nTPM
FANTOM5:142.9 Scaled Tags Per Million
Pig:134.8 nTPM
Mouse:260.8 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 136.1
2019 Male, age 18, unknown 144.5
2219 Male, age 76, both hemispheres 143.6
1827 Male, age 72, unknown 138.5
1870 Female, age 42, unknown 136.5
2586 Male, age 75, left hemisphere 134.4
2828 Female, age 72, unknown 134.3
2411 Female, age 72, unknown 133.4
1833 Male, age 53, unknown 133.0
2666 Male, age 74, left hemisphere 131.8
1830 Male, age 51, unknown 130.9
Dorsal raphe nucleus
nTPM: 136.1
1828 Male, age 53, unknown 140.8
2298 Female, age 72, unknown 139.0
2047 Male, age 72, unknown 135.3
2750 Male, age 76, both hemispheres 134.2
2016 Female, age 72, unknown 131.3
Inferior colliculus
nTPM: 138.0
2097 Female, age 72, unknown 141.8
1890 Male, age 53, unknown 140.7
2849 Male, age 72, unknown 135.8
1848 Female, age 42, unknown 133.5
Median raphe nucleus
nTPM: 137.1
2220 Male, age 76, midline 137.1
Pedunculopontine tegmental nucleus
nTPM: 138.3
2334 Male, age 80, both hemispheres 140.1
1921 Female, age 85, both hemispheres 140.0
2338 Male, age 61, both hemispheres 134.9
Periaquaductal grey, anterior
nTPM: 135.5
1795 Male, age 51, unknown 137.8
2502 Female, age 75, unknown 134.6
1947 Male, age 18, unknown 134.1
Periaquaductal grey, dorsal
nTPM: 131.1
2850 Male, age 76, both hemispheres 135.2
1840 Male, age 53, unknown 131.2
1831 Male, age 72, unknown 130.2
2464 Female, age 72, unknown 127.9
Periaquaductal grey, lateral
nTPM: 132.7
2272 Male, age 74, both hemispheres 143.3
2053 Male, age 18, unknown 128.9
2140 Male, age 76, both hemispheres 125.9
Pretectal area
nTPM: 141.2
1817 Female, age 42, unknown 154.6
2007 Male, age 72, unknown 148.8
1816 Male, age 51, unknown 147.2
1944 Female, age 72, unknown 144.7
2667 Female, age 75, unknown 144.2
1815 Male, age 53, unknown 143.8
2273 Male, age 74, both hemispheres 141.0
2224 Female, age 72, unknown 136.4
2407 Male, age 75, both hemispheres 135.3
2825 Male, age 18, unknown 131.5
2316 Male, age 76, right hemisphere 126.0
Red nucleus
nTPM: 141.3
1821 Female, age 72, unknown 151.4
2725 Female, age 75, unknown 150.4
2503 Female, age 72, unknown 145.3
2785 Male, age 18, unknown 144.3
1865 Male, age 51, unknown 141.7
2769 Male, age 72, unknown 140.0
2227 Male, age 72, unknown 139.6
1904 Male, age 53, unknown 139.3
1954 Female, age 42, unknown 137.9
2823 Male, age 76, right hemisphere 137.8
2584 Male, age 75, left hemisphere 134.6
2588 Male, age 74, left hemisphere 133.3
Substantia nigra
nTPM: 144.8
1916 Female, age 42, unknown 165.2
1889 Female, age 72, unknown 152.7
2699 Male, age 18, unknown 150.0
1941 Male, age 53, unknown 149.4
1851 Male, age 51, unknown 149.2
2241 Male, age 72, unknown 141.8
2665 Male, age 74, both hemispheres 137.7
2409 Female, age 72, unknown 137.5
2590 Female, age 75, unknown 132.4
2583 Male, age 75, right hemisphere 132.0
Superior colliculus
nTPM: 135.1
1895 Male, age 76, right hemisphere 139.1
2087 Female, age 72, unknown 138.7
1796 Male, age 53, unknown 138.4
2587 Male, age 74, left hemisphere 137.8
2668 Female, age 75, unknown 136.0
1913 Female, age 42, unknown 134.7
2261 Male, age 18, unknown 133.6
1995 Male, age 72, unknown 133.0
1839 Male, age 51, unknown 132.1
2664 Male, age 75, both hemispheres 128.1
Ventral tegmental area
nTPM: 141.1
2218 Male, age 76, both hemispheres 147.9
2410 Female, age 72, unknown 147.9
1915 Female, age 42, unknown 146.1
2223 Female, age 72, unknown 141.4
1942 Male, age 51, unknown 135.6
2021 Male, age 53, unknown 127.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 190.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.5
Samples: 139

Max nTPM: 358.5
Min nTPM: 98.3
Std nTPM: 44.3
Median nTPM: 183.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 358.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 338.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 299.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 290.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 285.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 282.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 279.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 276.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 274.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 270.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 264.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.9
FF:10158-103A5 76 years, female 142.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 134.8
Pig sample Sample description nTPM
Midbrain
nTPM: 127.1
Samples: 4

Max nTPM: 158.4
Min nTPM: 105.6
Sample A Female 158.4
Sample B Female 105.6
Sample C Male 130.8
Sample D Male 113.7
Periaqueductal gray
nTPM: 95.6
Samples: 3

Max nTPM: 108.5
Min nTPM: 84.8
Sample B Female 93.5
Sample C Male 108.5
Sample D Male 84.8
Substantia nigra
nTPM: 109.9
Samples: 4

Max nTPM: 148.7
Min nTPM: 89.5
Sample A Female 148.7
Sample B Female 89.5
Sample C Male 108.9
Sample D Male 92.3
Superior colliculi
nTPM: 134.8
Samples: 4

Max nTPM: 160.7
Min nTPM: 104.8
Sample A Female 160.7
Sample B Female 104.8
Sample C Male 148.7
Sample D Male 125.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 260.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 260.8
Samples: 4

Max nTPM: 277.6
Min nTPM: 244.4
Sample A Male 277.6
Sample B Male 253.3
Sample C Female 244.4
Sample D Female 267.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
71608213 Antisense, RP_050927_01_B09, Mouse strain C57BL/6J (56 days, male) 14.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.