MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:16.2 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:29.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2586 Male, age 75, left hemisphere 24.8
2828 Female, age 72, unknown 22.5
2666 Male, age 74, left hemisphere 21.7
1827 Male, age 72, unknown 21.1
2019 Male, age 18, unknown 21.0
1833 Male, age 53, unknown 20.0
1870 Female, age 42, unknown 20.0
2411 Female, age 72, unknown 20.0
1830 Male, age 51, unknown 19.7
2219 Male, age 76, both hemispheres 17.9
Dorsal raphe nucleus
nTPM: 20.3
1828 Male, age 53, unknown 20.9
2047 Male, age 72, unknown 20.9
2016 Female, age 72, unknown 20.4
2298 Female, age 72, unknown 20.2
2750 Male, age 76, both hemispheres 19.0
Inferior colliculus
nTPM: 21.2
1890 Male, age 53, unknown 21.3
1848 Female, age 42, unknown 21.2
2849 Male, age 72, unknown 21.1
2097 Female, age 72, unknown 21.0
Median raphe nucleus
nTPM: 19.0
2220 Male, age 76, midline 19.0
Pedunculopontine tegmental nucleus
nTPM: 18.7
2334 Male, age 80, both hemispheres 19.7
1921 Female, age 85, both hemispheres 19.4
2338 Male, age 61, both hemispheres 17.0
Periaquaductal grey, anterior
nTPM: 21.7
2502 Female, age 75, unknown 22.0
1795 Male, age 51, unknown 21.7
1947 Male, age 18, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 21.6
2850 Male, age 76, both hemispheres 24.5
1840 Male, age 53, unknown 21.4
1831 Male, age 72, unknown 20.5
2464 Female, age 72, unknown 20.1
Periaquaductal grey, lateral
nTPM: 22.1
2140 Male, age 76, both hemispheres 25.1
2053 Male, age 18, unknown 21.2
2272 Male, age 74, both hemispheres 19.8
Pretectal area
nTPM: 21.7
1816 Male, age 51, unknown 23.6
2007 Male, age 72, unknown 22.9
1817 Female, age 42, unknown 22.5
2667 Female, age 75, unknown 22.2
2316 Male, age 76, right hemisphere 21.8
2825 Male, age 18, unknown 21.8
1944 Female, age 72, unknown 21.7
1815 Male, age 53, unknown 21.6
2407 Male, age 75, both hemispheres 21.1
2273 Male, age 74, both hemispheres 20.1
2224 Female, age 72, unknown 19.6
Red nucleus
nTPM: 20.7
2588 Male, age 74, left hemisphere 22.1
2725 Female, age 75, unknown 21.1
1954 Female, age 42, unknown 21.0
2769 Male, age 72, unknown 20.9
1821 Female, age 72, unknown 20.8
2785 Male, age 18, unknown 20.7
1865 Male, age 51, unknown 20.5
1904 Male, age 53, unknown 20.5
2227 Male, age 72, unknown 20.5
2584 Male, age 75, left hemisphere 20.4
2503 Female, age 72, unknown 20.3
2823 Male, age 76, right hemisphere 19.5
Substantia nigra
nTPM: 20.9
1889 Female, age 72, unknown 21.6
1916 Female, age 42, unknown 21.6
2665 Male, age 74, both hemispheres 21.6
2583 Male, age 75, right hemisphere 21.3
2699 Male, age 18, unknown 21.2
1851 Male, age 51, unknown 20.8
2590 Female, age 75, unknown 20.7
1941 Male, age 53, unknown 20.4
2241 Male, age 72, unknown 20.2
2409 Female, age 72, unknown 19.9
Superior colliculus
nTPM: 21.3
2664 Male, age 75, both hemispheres 23.7
1796 Male, age 53, unknown 22.5
2087 Female, age 72, unknown 21.8
2261 Male, age 18, unknown 21.4
1839 Male, age 51, unknown 20.9
1895 Male, age 76, right hemisphere 20.9
1995 Male, age 72, unknown 20.8
2587 Male, age 74, left hemisphere 20.6
2668 Female, age 75, unknown 20.3
1913 Female, age 42, unknown 19.8
Ventral tegmental area
nTPM: 20.4
2223 Female, age 72, unknown 20.8
2410 Female, age 72, unknown 20.8
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 20.4
2021 Male, age 53, unknown 20.0
2218 Male, age 76, both hemispheres 19.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.2
Samples: 139

Max nTPM: 35.3
Min nTPM: 8.9
Std nTPM: 4.6
Median nTPM: 15.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 33.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 26.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 26.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 25.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 24.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 24.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 23.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 23.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.4
FF:10158-103A5 76 years, female 26.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 4.6
Sample C Male 8.3
Sample D Male 6.3
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.2
Min nTPM: 4.6
Sample B Female 4.6
Sample C Male 5.2
Sample D Male 4.6
Substantia nigra
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.3
Sample A Female 5.5
Sample B Female 4.3
Sample C Male 5.7
Sample D Male 4.8
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.4
Sample A Female 5.9
Sample B Female 5.4
Sample C Male 8.0
Sample D Male 6.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 27.7
Sample A Male 31.3
Sample B Male 30.3
Sample C Female 28.6
Sample D Female 27.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71487046 Antisense, RP_050913_01_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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