MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.9 nTPM
HPA:86.9 nTPM
GTEx:87.6 nTPM
FANTOM5:54.7 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:72.8 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.5
2219 Male, age 76, both hemispheres 73.8
2828 Female, age 72, unknown 71.7
1833 Male, age 53, unknown 70.8
1870 Female, age 42, unknown 70.6
2411 Female, age 72, unknown 70.0
2666 Male, age 74, left hemisphere 69.6
1827 Male, age 72, unknown 68.5
1830 Male, age 51, unknown 68.2
2586 Male, age 75, left hemisphere 67.6
2019 Male, age 18, unknown 63.7
Dorsal raphe nucleus
nTPM: 75.4
2047 Male, age 72, unknown 81.0
2750 Male, age 76, both hemispheres 78.0
2298 Female, age 72, unknown 76.8
1828 Male, age 53, unknown 74.0
2016 Female, age 72, unknown 67.1
Inferior colliculus
nTPM: 62.9
2849 Male, age 72, unknown 65.2
1848 Female, age 42, unknown 62.6
1890 Male, age 53, unknown 62.1
2097 Female, age 72, unknown 61.7
Median raphe nucleus
nTPM: 86.9
2220 Male, age 76, midline 86.9
Pedunculopontine tegmental nucleus
nTPM: 75.1
2334 Male, age 80, both hemispheres 84.1
2338 Male, age 61, both hemispheres 74.0
1921 Female, age 85, both hemispheres 67.1
Periaquaductal grey, anterior
nTPM: 69.5
1795 Male, age 51, unknown 71.4
1947 Male, age 18, unknown 70.4
2502 Female, age 75, unknown 66.6
Periaquaductal grey, dorsal
nTPM: 69.3
2850 Male, age 76, both hemispheres 81.8
1840 Male, age 53, unknown 66.8
1831 Male, age 72, unknown 64.2
2464 Female, age 72, unknown 64.2
Periaquaductal grey, lateral
nTPM: 69.1
2272 Male, age 74, both hemispheres 71.8
2140 Male, age 76, both hemispheres 71.1
2053 Male, age 18, unknown 64.4
Pretectal area
nTPM: 67.7
2667 Female, age 75, unknown 75.0
2224 Female, age 72, unknown 72.8
2273 Male, age 74, both hemispheres 71.8
1816 Male, age 51, unknown 68.7
2825 Male, age 18, unknown 68.6
1815 Male, age 53, unknown 68.2
1817 Female, age 42, unknown 67.5
1944 Female, age 72, unknown 65.0
2007 Male, age 72, unknown 64.5
2407 Male, age 75, both hemispheres 63.5
2316 Male, age 76, right hemisphere 59.5
Red nucleus
nTPM: 67.0
2725 Female, age 75, unknown 71.8
1954 Female, age 42, unknown 68.5
1904 Male, age 53, unknown 68.3
2823 Male, age 76, right hemisphere 67.6
1821 Female, age 72, unknown 67.4
1865 Male, age 51, unknown 67.0
2503 Female, age 72, unknown 67.0
2227 Male, age 72, unknown 66.5
2769 Male, age 72, unknown 66.5
2785 Male, age 18, unknown 66.1
2584 Male, age 75, left hemisphere 64.0
2588 Male, age 74, left hemisphere 63.8
Substantia nigra
nTPM: 74.1
1916 Female, age 42, unknown 90.6
2699 Male, age 18, unknown 82.1
1851 Male, age 51, unknown 80.2
2241 Male, age 72, unknown 75.2
1941 Male, age 53, unknown 71.9
2409 Female, age 72, unknown 71.4
2665 Male, age 74, both hemispheres 71.3
1889 Female, age 72, unknown 68.5
2583 Male, age 75, right hemisphere 65.1
2590 Female, age 75, unknown 64.4
Superior colliculus
nTPM: 65.8
1796 Male, age 53, unknown 68.7
2261 Male, age 18, unknown 68.5
1913 Female, age 42, unknown 68.4
2587 Male, age 74, left hemisphere 68.2
1995 Male, age 72, unknown 66.2
2087 Female, age 72, unknown 65.7
2668 Female, age 75, unknown 65.6
2664 Male, age 75, both hemispheres 63.7
1839 Male, age 51, unknown 63.2
1895 Male, age 76, right hemisphere 59.5
Ventral tegmental area
nTPM: 74.5
2218 Male, age 76, both hemispheres 79.1
2223 Female, age 72, unknown 78.1
1915 Female, age 42, unknown 77.3
2410 Female, age 72, unknown 71.8
2021 Male, age 53, unknown 71.7
1942 Male, age 51, unknown 69.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.6
Samples: 139

Max nTPM: 161.5
Min nTPM: 42.1
Std nTPM: 21.7
Median nTPM: 87.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 161.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 136.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 133.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 132.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 130.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 129.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 125.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 123.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 123.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 121.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 121.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.7
FF:10158-103A5 76 years, female 54.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.1
Pig sample Sample description nTPM
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 30.6
Min nTPM: 18.9
Sample A Female 30.6
Sample B Female 21.4
Sample C Male 26.9
Sample D Male 18.9
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 26.9
Min nTPM: 19.6
Sample B Female 19.6
Sample C Male 26.9
Sample D Male 20.7
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 38.7
Min nTPM: 21.3
Sample A Female 38.7
Sample B Female 21.3
Sample C Male 37.3
Sample D Male 22.9
Superior colliculi
nTPM: 25.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 22.3
Sample A Female 26.5
Sample B Female 22.3
Sample C Male 29.1
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.8
Samples: 4

Max nTPM: 77.6
Min nTPM: 66.6
Sample A Male 77.4
Sample B Male 69.6
Sample C Female 66.6
Sample D Female 77.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
69672689 Antisense, RP_050428_04_C10, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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